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Praseodymium in PDB 1k0z: Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A.

Enzymatic activity of Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A.

All present enzymatic activity of Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A.:
3.1.21.4;

Protein crystallography data

The structure of Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A., PDB code: 1k0z was solved by A.Spyridaki, A.Athanasiadis, C.Matzen, T.Lanio, A.Jeltsch, A.Simoncsits, E.Scheuring-Vanamee, M.Kokkinidis, A.Pingoud, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.43 / 2.05
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.740, 105.630, 46.900, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.6

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A. (pdb code 1k0z). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A., PDB code: 1k0z:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 1k0z

Go back to Praseodymium Binding Sites List in 1k0z
Praseodymium binding site 1 out of 2 in the Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A.


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr201

b:28.7
occ:0.90
OE1 A:GLU68 2.5 28.1 1.0
OD2 A:ASP58 2.6 25.2 1.0
O2 A:SO4202 2.6 38.8 1.0
O A:GLY56 2.6 31.6 1.0
OD1 A:ASP58 2.6 27.7 1.0
O A:HOH281 2.7 46.7 1.0
OE2 A:GLU68 2.7 31.4 1.0
O4 A:SO4202 2.8 36.2 1.0
CG A:ASP58 2.9 26.9 1.0
CD A:GLU68 3.0 27.7 1.0
S A:SO4202 3.2 38.2 1.0
C A:GLY56 3.8 31.6 1.0
O3 A:SO4202 4.1 39.7 1.0
O1 A:SO4202 4.3 39.9 1.0
N A:GLY56 4.3 31.5 1.0
NZ A:LYS70 4.4 23.7 1.0
CB A:ASP58 4.4 25.1 1.0
CG A:GLU68 4.4 23.9 1.0
CA A:GLY56 4.5 31.5 1.0
N A:ASP58 4.6 27.4 1.0
O A:LEU69 4.6 21.2 1.0
C A:ASN57 4.7 29.9 1.0
N A:ASN57 4.7 33.2 1.0
N A:LEU69 4.8 20.7 1.0
O A:HOH247 4.8 35.0 1.0
CA A:ASN57 4.8 31.4 1.0
O A:HOH226 4.8 48.5 1.0

Praseodymium binding site 2 out of 2 in 1k0z

Go back to Praseodymium Binding Sites List in 1k0z
Praseodymium binding site 2 out of 2 in the Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A.


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Crystal Structure of the Pvuii Endonuclease with PR3+ and SO4 Ions Bound in the Active Site at 2.05A. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr203

b:25.6
occ:0.96
O B:HOH296 2.4 31.5 1.0
O B:GLY56 2.5 30.8 1.0
OD1 B:ASP58 2.5 23.9 1.0
O4 B:SO4204 2.5 34.0 1.0
OD2 B:ASP58 2.6 27.5 1.0
OE2 B:GLU68 2.6 21.6 1.0
O2 B:SO4204 2.6 30.1 1.0
OE1 B:GLU68 2.6 20.1 1.0
O B:HOH233 2.8 39.7 1.0
CG B:ASP58 2.9 26.7 1.0
CD B:GLU68 3.0 20.7 1.0
S B:SO4204 3.1 33.1 1.0
C B:GLY56 3.6 29.1 1.0
O3 B:SO4204 4.1 37.6 1.0
O1 B:SO4204 4.2 36.2 1.0
N B:GLY56 4.3 28.5 1.0
O B:HOH245 4.3 72.5 1.0
CA B:GLY56 4.3 28.7 1.0
CB B:ASP58 4.4 23.3 1.0
CG B:GLU68 4.5 18.8 1.0
NZ B:LYS70 4.5 21.2 1.0
O B:HOH227 4.5 37.4 1.0
N B:ASP58 4.6 24.2 1.0
N B:ASN57 4.6 26.6 1.0
C B:ASN57 4.7 25.0 1.0
O B:LEU69 4.7 17.4 1.0
N B:LEU69 4.8 16.0 1.0
CA B:ASN57 4.8 26.4 1.0

Reference:

A.Spyridaki, A.Athanasiadis, C.Matzen, T.Lanio, A.Jeltsch, A.Simoncsits, E.Scheuring-Vanamee, M.Kokkinidis, A.Pingoud. N/A N/A.
Page generated: Wed Dec 16 02:02:56 2020

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