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Praseodymium in PDB 2if5: Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis

Protein crystallography data

The structure of Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis, PDB code: 2if5 was solved by F.D.Schubot, D.S.Waugh, J.Tropea, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.08 / 2.00
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 65.850, 65.850, 162.603, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 29.1

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis (pdb code 2if5). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 3 binding sites of Praseodymium where determined in the Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis, PDB code: 2if5:
Jump to Praseodymium binding site number: 1; 2; 3;

Praseodymium binding site 1 out of 3 in 2if5

Go back to Praseodymium Binding Sites List in 2if5
Praseodymium binding site 1 out of 3 in the Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr128

b:46.1
occ:1.00
O A:HOH154 2.3 25.8 1.0
O A:HOH151 2.3 27.0 1.0
O A:HOH229 2.5 32.9 1.0
O A:HOH145 2.7 29.6 1.0
O A:HOH226 2.8 36.1 1.0
PR A:PR130 4.1 27.2 1.0
O A:HOH173 4.6 40.5 1.0
CG A:ASP127 4.6 38.0 1.0
OD1 A:ASP127 4.7 40.9 1.0
O A:HOH206 4.7 28.1 1.0
CB A:ASP127 4.8 35.3 1.0
OD2 A:ASP127 4.9 42.0 1.0

Praseodymium binding site 2 out of 3 in 2if5

Go back to Praseodymium Binding Sites List in 2if5
Praseodymium binding site 2 out of 3 in the Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr129

b:0.0
occ:1.00
O A:HOH171 2.3 25.3 1.0
OE2 A:GLU25 2.9 34.0 1.0
OG A:SER21 3.3 21.5 1.0
O A:HOH208 3.6 33.2 1.0
CB A:SER21 3.7 16.9 1.0
CD A:GLU25 3.7 26.2 1.0
N A:GLY22 4.0 14.8 1.0
OE1 A:GLU25 4.2 32.5 1.0
C A:SER21 4.2 15.6 1.0
O A:ASP18 4.3 15.0 1.0
CA A:GLY22 4.4 15.6 1.0
O A:SER21 4.4 15.8 1.0
CA A:SER21 4.6 15.1 1.0
CG A:GLU25 4.7 25.1 1.0

Praseodymium binding site 3 out of 3 in 2if5

Go back to Praseodymium Binding Sites List in 2if5
Praseodymium binding site 3 out of 3 in the Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 3 of Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr130

b:27.2
occ:1.00
O A:HOH178 2.1 35.3 1.0
O A:HOH206 2.4 28.1 1.0
O A:HOH154 2.5 25.8 1.0
OD2 A:ASP127 2.8 42.0 1.0
CB A:ASP127 3.3 35.3 1.0
CG A:ASP127 3.3 38.0 1.0
O A:HOH151 4.1 27.0 1.0
PR A:PR128 4.1 46.1 1.0
OD1 A:ASP127 4.4 40.9 1.0
O A:HOH145 4.4 29.6 1.0
CA A:ASP127 4.6 34.8 1.0
O A:HOH231 4.6 27.0 1.0
O A:HOH198 4.8 42.5 1.0

Reference:

F.D.Schubot, J.E.Tropea, D.S.Waugh. Structure of the Poz Domain of Human Lrf, A Master Regulator of Oncogenesis. Biochem.Biophys.Res.Commun. V. 351 1 2006.
ISSN: ISSN 0006-291X
PubMed: 17052694
DOI: 10.1016/J.BBRC.2006.09.167
Page generated: Wed Dec 16 02:02:56 2020

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