Praseodymium in the structure of Structure Of the Poz Domain Of Human Lrf, A Master Regulator of Oncogenesis (pdb 2if5)

The binding sites of Praseodymium atom in the structure of Structure Of the Poz Domain Of Human Lrf, A Master Regulator of Oncogenesis (pdb code 2if5). This binding sites where shown with 5.0 Angstroms radius around Praseodymium atom. The 2if5 structure was solved by F.D.SCHUBOT, D.S.WAUGH, J.TROPEA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 40.1-2.0 Space group I4122 a (A) 65.850 b (A) 65.850 c (A) 162.603 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 22.9 Rfree (%) 29.1 Praseodymium Binding Sites: Praseodymium binding site 1 out of 3 in 2if5 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Praseodymium in the PDB 2if5. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp127, A: Pr130, A: Hoh145, A: Hoh151, A: Hoh154, A: Hoh173, A: Hoh206, A: Hoh226, A: Hoh229, conact list: Atom Atom Distance (A) Pr CB A:Asp127 4.83 Pr OD2 A:Asp127 4.90 Pr OD1 A:Asp127 4.66 Pr CG A:Asp127 4.64 Pr PR A:Pr130 4.13 Pr O A:Hoh145 2.67 Pr O A:Hoh151 2.35 Pr O A:Hoh154 2.25 Pr O A:Hoh173 4.57 Pr O A:Hoh206 4.69 Pr O A:Hoh226 2.77 Pr O A:Hoh229 2.50 interactive model: Praseodymium binding site 2 out of 3 in 2if5 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Praseodymium in the PDB 2if5. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp18, A: Ser21, A: Gly22, A: Glu25, A: Hoh171, A: Hoh208, conact list: Atom Atom Distance (A) Pr O A:Asp18 4.30 Pr O A:Ser21 4.42 Pr CB A:Ser21 3.68 Pr OG A:Ser21 3.33 Pr C A:Ser21 4.17 Pr CA A:Ser21 4.60 Pr N A:Gly22 4.05 Pr CA A:Gly22 4.36 Pr OE1 A:Glu25 4.16 Pr OE2 A:Glu25 2.90 Pr CD A:Glu25 3.71 Pr CG A:Glu25 4.74 Pr O A:Hoh171 2.28 Pr O A:Hoh208 3.65 interactive model: Praseodymium binding site 3 out of 3 in 2if5 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Praseodymium in the PDB 2if5. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp127, A: Pr128, A: Hoh145, A: Hoh151, A: Hoh154, A: Hoh178, A: Hoh198, A: Hoh206, A: Hoh231, conact list: Atom Atom Distance (A) Pr CB A:Asp127 3.26 Pr OD2 A:Asp127 2.77 Pr OD1 A:Asp127 4.36 Pr CG A:Asp127 3.31 Pr CA A:Asp127 4.60 Pr PR A:Pr128 4.13 Pr O A:Hoh145 4.43 Pr O A:Hoh151 4.13 Pr O A:Hoh154 2.48 Pr O A:Hoh178 2.14 Pr O A:Hoh198 4.75 Pr O A:Hoh206 2.44 Pr O A:Hoh231 4.61 interactive model: