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  Praseodymium
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    PDB 1k0z-4flb
      1k0z
      2f1r
      2if5
      2isn
      2vsy
      2vxb
      2vxc
      2wvi
      2znr
      3fou
      3mvc
      4afi
      4flb

Praseodymium in the structure of Structure Of the Poz Domain Of Human Lrf, A Master Regulator of Oncogenesis (pdb 2if5)






The binding sites of Praseodymium atom in the structure of Structure Of the Poz Domain Of Human Lrf, A Master Regulator of Oncogenesis (pdb code 2if5). This binding sites where shown with 5.0 Angstroms radius around Praseodymium atom.
The 2if5 structure was solved by F.D.SCHUBOT, D.S.WAUGH, J.TROPEA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)40.1-2.0
Space groupI4122
a (A)65.850
b (A)65.850
c (A)162.603
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)22.9
Rfree (%)29.1


Praseodymium Binding Sites:

Praseodymium binding site 1 out of 3 in 2if5


Praseodymium binding site 1 out of 3 in 2if5
Click to enlarge
stereopicture of Praseodymium binding site 1 out of 3 in 2if5
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Praseodymium in the PDB 2if5. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp127, A: Pr130, A: Hoh145, A: Hoh151, A: Hoh154, A: Hoh173, A: Hoh206, A: Hoh226, A: Hoh229,

conact list:


AtomAtomDistance (A)
PrCB A:Asp1274.83
PrOD2 A:Asp1274.90
PrOD1 A:Asp1274.66
PrCG A:Asp1274.64
PrPR A:Pr1304.13
PrO A:Hoh1452.67
PrO A:Hoh1512.35
PrO A:Hoh1542.25
PrO A:Hoh1734.57
PrO A:Hoh2064.69
PrO A:Hoh2262.77
PrO A:Hoh2292.50

interactive model:


Praseodymium binding site 2 out of 3 in 2if5


Praseodymium binding site 2 out of 3 in 2if5
Click to enlarge
stereopicture of Praseodymium binding site 2 out of 3 in 2if5
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Praseodymium in the PDB 2if5. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp18, A: Ser21, A: Gly22, A: Glu25, A: Hoh171, A: Hoh208,

conact list:


AtomAtomDistance (A)
PrO A:Asp184.30
PrO A:Ser214.42
PrCB A:Ser213.68
PrOG A:Ser213.33
PrC A:Ser214.17
PrCA A:Ser214.60
PrN A:Gly224.05
PrCA A:Gly224.36
PrOE1 A:Glu254.16
PrOE2 A:Glu252.90
PrCD A:Glu253.71
PrCG A:Glu254.74
PrO A:Hoh1712.28
PrO A:Hoh2083.65

interactive model:


Praseodymium binding site 3 out of 3 in 2if5


Praseodymium binding site 3 out of 3 in 2if5
Click to enlarge
stereopicture of Praseodymium binding site 3 out of 3 in 2if5
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Praseodymium in the PDB 2if5. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp127, A: Pr128, A: Hoh145, A: Hoh151, A: Hoh154, A: Hoh178, A: Hoh198, A: Hoh206, A: Hoh231,

conact list:


AtomAtomDistance (A)
PrCB A:Asp1273.26
PrOD2 A:Asp1272.77
PrOD1 A:Asp1274.36
PrCG A:Asp1273.31
PrCA A:Asp1274.60
PrPR A:Pr1284.13
PrO A:Hoh1454.43
PrO A:Hoh1514.13
PrO A:Hoh1542.48
PrO A:Hoh1782.14
PrO A:Hoh1984.75
PrO A:Hoh2062.44
PrO A:Hoh2314.61

interactive model:




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