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Praseodymium in PDB 2isn: Crystal Structure of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii

Protein crystallography data

The structure of Crystal Structure of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii, PDB code: 2isn was solved by R.Agarwal, S.K.Burley, S.Swaminathan, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.06 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 52.986, 62.447, 63.738, 65.53, 70.21, 77.64
R / Rfree (%) 24.1 / 27.9

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Crystal Structure of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii (pdb code 2isn). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Crystal Structure of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii, PDB code: 2isn:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 2isn

Go back to Praseodymium Binding Sites List in 2isn
Praseodymium binding site 1 out of 2 in the Crystal Structure of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr522

b:19.0
occ:1.00
OD2 A:ASP323 2.3 18.9 1.0
OD2 A:ASP50 2.4 13.5 1.0
O A:HOH636 2.5 10.6 1.0
OD1 A:ASP277 2.6 13.8 1.0
O A:HOH637 2.7 13.8 1.0
O A:HOH635 2.7 13.8 1.0
OD2 A:ASP277 2.8 14.2 1.0
OD1 A:ASP323 2.9 16.4 1.0
CG A:ASP323 3.0 14.9 1.0
OD1 A:ASP50 3.0 11.9 1.0
CG A:ASP50 3.1 11.7 1.0
CG A:ASP277 3.1 12.8 1.0
O A:HOH532 4.1 14.7 1.0
O A:HOH618 4.4 16.4 1.0
CB A:ASP323 4.4 13.8 1.0
CB A:ASP50 4.5 9.9 1.0
CB A:ASP277 4.6 12.9 1.0
O A:HOH529 4.6 12.3 1.0
OE2 A:GLU281 4.7 17.4 1.0
OD2 A:ASP29 4.8 14.7 1.0
N A:GLY278 4.9 10.6 1.0
O A:GLY51 5.0 13.6 1.0

Praseodymium binding site 2 out of 2 in 2isn

Go back to Praseodymium Binding Sites List in 2isn
Praseodymium binding site 2 out of 2 in the Crystal Structure of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Crystal Structure of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr422

b:15.4
occ:1.00
OD2 B:ASP323 2.3 18.4 1.0
O B:HOH735 2.5 8.7 1.0
OD2 B:ASP50 2.5 12.6 1.0
O B:HOH736 2.6 11.3 1.0
OD1 B:ASP277 2.6 16.3 1.0
O B:HOH737 2.7 13.8 1.0
OD2 B:ASP277 2.8 13.9 1.0
OD1 B:ASP323 2.9 14.7 1.0
CG B:ASP323 2.9 14.2 1.0
OD1 B:ASP50 2.9 11.8 1.0
O B:HOH695 3.0 19.1 1.0
CG B:ASP50 3.0 12.4 1.0
CG B:ASP277 3.1 13.5 1.0
O B:HOH642 4.1 13.6 1.0
O B:HOH647 4.3 11.1 1.0
CB B:ASP323 4.4 13.6 1.0
CB B:ASP50 4.5 10.8 1.0
O B:HOH611 4.6 12.0 1.0
CB B:ASP277 4.6 12.4 1.0
O B:HOH614 4.6 9.9 1.0
O B:HOH658 4.7 15.8 1.0
OD2 B:ASP29 4.7 16.8 1.0
N B:GLY278 4.8 10.3 1.0
O B:ASN324 4.9 9.7 1.0
N B:ASN324 4.9 10.0 1.0

Reference:

S.C.Almo, J.B.Bonanno, J.M.Sauder, S.Emtage, T.P.Dilorenzo, V.Malashkevich, S.R.Wasserman, S.Swaminathan, S.Eswaramoorthy, R.Agarwal, D.Kumaran, M.Madegowda, S.Ragumani, Y.Patskovsky, J.Alvarado, U.A.Ramagopal, J.Faber-Barata, M.R.Chance, A.Sali, A.Fiser, Z.Y.Zhang, D.S.Lawrence, S.K.Burley. Structural Genomics of Protein Phosphatases. J.Struct.Funct.Genom. V. 8 121 2007.
ISSN: ISSN 1345-711X
PubMed: 18058037
DOI: 10.1007/S10969-007-9036-1
Page generated: Thu Oct 29 06:39:19 2020

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