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Praseodymium in PDB 2vxb: Structure of the CRB2-BRCT2 Domain

Protein crystallography data

The structure of Structure of the CRB2-BRCT2 Domain, PDB code: 2vxb was solved by M.L.Kilkenny, S.M.Roe, L.H.Pearl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.887, 73.733, 66.772, 90.00, 110.98, 90.00
R / Rfree (%) 18.9 / 24.9

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Structure of the CRB2-BRCT2 Domain (pdb code 2vxb). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 3 binding sites of Praseodymium where determined in the Structure of the CRB2-BRCT2 Domain, PDB code: 2vxb:
Jump to Praseodymium binding site number: 1; 2; 3;

Praseodymium binding site 1 out of 3 in 2vxb

Go back to Praseodymium Binding Sites List in 2vxb
Praseodymium binding site 1 out of 3 in the Structure of the CRB2-BRCT2 Domain


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Structure of the CRB2-BRCT2 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr1259

b:45.0
occ:1.00
O A:HOH2002 2.3 24.9 1.0
OD2 A:ASP21 2.4 47.8 1.0
O A:HOH2003 2.7 45.6 1.0
OD1 A:ASP22 2.7 33.5 1.0
OD2 A:ASP22 2.9 49.5 1.0
CG A:ASP22 3.1 46.6 1.0
CG A:ASP21 3.3 56.0 1.0
OD1 A:ASP21 3.4 35.7 1.0
CB A:ASP22 4.6 46.9 1.0
CB A:ASP21 4.7 47.6 1.0
C A:ASP21 5.0 64.1 1.0

Praseodymium binding site 2 out of 3 in 2vxb

Go back to Praseodymium Binding Sites List in 2vxb
Praseodymium binding site 2 out of 3 in the Structure of the CRB2-BRCT2 Domain


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Structure of the CRB2-BRCT2 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr1260

b:57.5
occ:1.00
OE2 A:GLU33 1.9 18.4 1.0
CD A:GLU33 2.8 51.3 1.0
OE1 A:GLU33 3.1 72.2 1.0
PR A:PR1261 3.9 62.9 0.5
CG A:GLU33 4.2 36.3 1.0
O A:HOH2007 4.3 43.0 1.0

Praseodymium binding site 3 out of 3 in 2vxb

Go back to Praseodymium Binding Sites List in 2vxb
Praseodymium binding site 3 out of 3 in the Structure of the CRB2-BRCT2 Domain


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 3 of Structure of the CRB2-BRCT2 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr1261

b:62.9
occ:0.50
OD2 A:ASP34 2.7 41.2 1.0
OE1 A:GLU33 2.7 72.2 1.0
OD1 A:ASP34 2.8 40.1 1.0
CG A:ASP34 3.1 47.0 1.0
CD A:GLU33 3.4 51.3 1.0
OE2 A:GLU33 3.8 18.4 1.0
PR A:PR1260 3.9 57.5 1.0
O A:HOH2007 4.5 43.0 1.0
CG A:GLU33 4.6 36.3 1.0
CB A:ASP34 4.6 40.5 1.0
N A:ASP34 4.9 40.3 1.0
CB A:GLU33 5.0 69.5 1.0

Reference:

M.L.Kilkenny, A.Dore, S.M.Roe, K.Nestoras, J.C.Y.Ho, F.Z.Watts, L.H.Pearl. Structural and Functional Analysis of the CRB2-BRCT2 Domain Reveals Distinct Roles in Checkpoint Signaling and Dna Damage Repair. Genes Dev. V. 22 2034 2008.
ISSN: ISSN 0890-9369
PubMed: 18676809
DOI: 10.1101/GAD.472808
Page generated: Thu Oct 29 06:39:20 2020

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