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  Praseodymium
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    PDB 1k0z-4flb
      1k0z
      2f1r
      2if5
      2isn
      2vsy
      2vxb
      2vxc
      2wvi
      2znr
      3fou
      3mvc
      4afi
      4flb

Praseodymium in the structure of Structure of the CRB2-BRCT2 Domain (pdb 2vxb)






The binding sites of Praseodymium atom in the structure of Structure of the CRB2-BRCT2 Domain (pdb code 2vxb). This binding sites where shown with 5.0 Angstroms radius around Praseodymium atom.
The 2vxb structure was solved by M.L.KILKENNY, S.M.ROE, L.H.PEARL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)35.0-2.3
Space groupP1211
a (A)56.887
b (A)73.733
c (A)66.772
alpha (°)90.00
beta (°)110.98
gamma (°)90.00
Rfactor (%)18.9
Rfree (%)24.9


Praseodymium Binding Sites:

Praseodymium binding site 1 out of 3 in 2vxb


Praseodymium binding site 1 out of 3 in 2vxb
Click to enlarge
stereopicture of Praseodymium binding site 1 out of 3 in 2vxb
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Praseodymium in the PDB 2vxb. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp21, A: Asp22, A: Hoh2002, A: Hoh2003,

conact list:


AtomAtomDistance (A)
PrCB A:Asp214.69
PrOD2 A:Asp212.44
PrC A:Asp214.99
PrOD1 A:Asp213.42
PrCG A:Asp213.28
PrCB A:Asp224.57
PrOD2 A:Asp222.86
PrOD1 A:Asp222.74
PrCG A:Asp223.12
PrO A:Hoh20022.25
PrO A:Hoh20032.69

interactive model:


Praseodymium binding site 2 out of 3 in 2vxb


Praseodymium binding site 2 out of 3 in 2vxb
Click to enlarge
stereopicture of Praseodymium binding site 2 out of 3 in 2vxb
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Praseodymium in the PDB 2vxb. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu33, A: Pr1261, A: Hoh2007,

conact list:


AtomAtomDistance (A)
PrOE1 A:Glu333.07
PrOE2 A:Glu331.90
PrCD A:Glu332.80
PrCG A:Glu334.17
PrPR A:Pr12613.94
PrO A:Hoh20074.32

interactive model:


Praseodymium binding site 3 out of 3 in 2vxb


Praseodymium binding site 3 out of 3 in 2vxb
Click to enlarge
stereopicture of Praseodymium binding site 3 out of 3 in 2vxb
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Praseodymium in the PDB 2vxb. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu33, A: Asp34, A: Pr1260, A: Hoh2007,

conact list:


AtomAtomDistance (A)
PrOE1 A:Glu332.73
PrCB A:Glu334.96
PrOE2 A:Glu333.75
PrCD A:Glu333.44
PrCG A:Glu334.55
PrN A:Asp344.87
PrCB A:Asp344.56
PrOD2 A:Asp342.66
PrOD1 A:Asp342.80
PrCG A:Asp343.07
PrPR A:Pr12603.94
PrO A:Hoh20074.48

interactive model:




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