Chemical elements
  Praseodymium
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    PDB 1k0z-4flb
      1k0z
      2f1r
      2if5
      2isn
      2vsy
      2vxb
      2vxc
      2wvi
      2znr
      3fou
      3mvc
      4afi
      4flb

Praseodymium in the structure of Structure of the CRB2-BRCT2 Domain Complex With Phosphopeptide. (pdb 2vxc)






The binding sites of Praseodymium atom in the structure of Structure of the CRB2-BRCT2 Domain Complex With Phosphopeptide. (pdb code 2vxc). This binding sites where shown with 5.0 Angstroms radius around Praseodymium atom.
The 2vxc structure was solved by M.L.KILKENNY, S.M.ROE, L.H.PEARL, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)65.0-3.1
Space groupP21212
a (A)73.358
b (A)140.415
c (A)56.875
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)19.52
Rfree (%)24.44


Praseodymium Binding Sites:

Praseodymium binding site 1 out of 4 in 2vxc


Praseodymium binding site 1 out of 4 in 2vxc
Click to enlarge
stereopicture of Praseodymium binding site 1 out of 4 in 2vxc
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Praseodymium in the PDB 2vxc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gln537, A: Asp541, A: Asp542, A: Hoh2001,

conact list:


AtomAtomDistance (A)
PrNE2 A:Gln5374.04
PrOE1 A:Gln5374.28
PrCD A:Gln5374.56
PrO A:Asp5414.97
PrCB A:Asp5414.12
PrOD2 A:Asp5412.30
PrC A:Asp5414.83
PrOD1 A:Asp5413.35
PrCG A:Asp5412.99
PrN A:Asp5424.97
PrCB A:Asp5424.52
PrOD2 A:Asp5423.05
PrOD1 A:Asp5422.39
PrCG A:Asp5423.07
PrO A:Hoh20012.32

interactive model:


Praseodymium binding site 2 out of 4 in 2vxc


Praseodymium binding site 2 out of 4 in 2vxc
Click to enlarge
stereopicture of Praseodymium binding site 2 out of 4 in 2vxc
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Praseodymium in the PDB 2vxc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His659, A: Asp662,

conact list:


AtomAtomDistance (A)
PrO A:His6592.86
PrCB A:His6594.64
PrC A:His6593.90
PrCA A:His6594.42
PrN A:Asp6624.90
PrCB A:Asp6624.58
PrOD2 A:Asp6622.80
PrOD1 A:Asp6623.88
PrCG A:Asp6623.51

interactive model:


Praseodymium binding site 3 out of 4 in 2vxc


Praseodymium binding site 3 out of 4 in 2vxc
Click to enlarge
stereopicture of Praseodymium binding site 3 out of 4 in 2vxc
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Praseodymium in the PDB 2vxc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp541, B: Asp542, B: Pr1780, B: Hoh2002,

conact list:


AtomAtomDistance (A)
PrCB B:Asp5414.65
PrOD2 B:Asp5412.72
PrOD1 B:Asp5413.80
PrCG B:Asp5413.49
PrCB B:Asp5424.87
PrOD2 B:Asp5423.38
PrOD1 B:Asp5422.71
PrCG B:Asp5423.42
PrPR B:Pr17803.69
PrO B:Hoh20023.53

interactive model:


Praseodymium binding site 4 out of 4 in 2vxc


Praseodymium binding site 4 out of 4 in 2vxc
Click to enlarge
stereopicture of Praseodymium binding site 4 out of 4 in 2vxc
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Praseodymium in the PDB 2vxc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp542, B: Ser603, B: Trp604, B: Pr1779, B: Hoh2002, B: Hoh2008,

conact list:


AtomAtomDistance (A)
PrCB B:Asp5424.33
PrOD2 B:Asp5424.62
PrOD1 B:Asp5422.86
PrCG B:Asp5423.76
PrCA B:Asp5424.98
PrO B:Ser6032.64
PrCB B:Ser6034.77
PrC B:Ser6033.60
PrCA B:Ser6034.24
PrN B:Trp6044.56
PrCA B:Trp6044.77
PrPR B:Pr17793.69
PrO B:Hoh20023.29
PrO B:Hoh20083.30

interactive model:




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