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    PDB 1k0z-4flb
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      2f1r
      2if5
      2isn
      2vsy
      2vxb
      2vxc
      2wvi
      2znr
      3fou
      3mvc
      4afi
      4flb

Praseodymium in the structure of Crystal Structure Of the N-Terminal Domain of BUBR1 (pdb 2wvi)






The binding sites of Praseodymium atom in the structure of Crystal Structure Of the N-Terminal Domain of BUBR1 (pdb code 2wvi). This binding sites where shown with 5.0 Angstroms radius around Praseodymium atom.
The 2wvi structure was solved by S.D'ARCY, O.R.DAVIES, T.L.BLUNDELL, V.M.BOLANOS-GARCIA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)54.4-1.8
Space groupP3221
a (A)62.796
b (A)62.796
c (A)90.450
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)22.188
Rfree (%)25.986


Praseodymium Binding Sites:

Praseodymium binding site 1 out of 2 in 2wvi


Praseodymium binding site 1 out of 2 in 2wvi
Click to enlarge
stereopicture of Praseodymium binding site 1 out of 2 in 2wvi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Praseodymium in the PDB 2wvi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu214, A: Glu215, A: Glu218, A: Pr1222, A: Act1223, A: Hoh2113, A: Hoh2114, A: Hoh2117,

conact list:


AtomAtomDistance (A)
PrOE1 A:Glu2142.64
PrOE2 A:Glu2142.63
PrCD A:Glu2142.99
PrCG A:Glu2144.51
PrOE1 A:Glu2154.71
PrOE2 A:Glu2152.62
PrCD A:Glu2153.79
PrCG A:Glu2154.48
PrCA A:Glu2154.88
PrOE1 A:Glu2181.49
PrOE2 A:Glu2182.61
PrCD A:Glu2182.45
PrCG A:Glu2184.00
PrPR A:Pr12224.15
PrO A:Act12232.45
PrCH3 A:Act12234.25
PrC A:Act12232.83
PrOXT A:Act12232.57
PrO A:Hoh21134.93
PrO A:Hoh21144.01
PrO A:Hoh21174.84

interactive model:


Praseodymium binding site 2 out of 2 in 2wvi


Praseodymium binding site 2 out of 2 in 2wvi
Click to enlarge
stereopicture of Praseodymium binding site 2 out of 2 in 2wvi
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Praseodymium in the PDB 2wvi. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu215, A: Glu218, A: Pr1221, A: Act1223, A: Edo1225, A: Hoh2114,

conact list:


AtomAtomDistance (A)
PrOE1 A:Glu2152.62
PrOE2 A:Glu2152.55
PrCD A:Glu2152.97
PrCG A:Glu2154.49
PrOE1 A:Glu2184.16
PrPR A:Pr12214.15
PrO A:Act12232.50
PrCH3 A:Act12233.84
PrC A:Act12233.52
PrOXT A:Act12234.58
PrC2 A:Edo12254.91
PrO A:Hoh21142.34

interactive model:




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