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Praseodymium in PDB 3ate: Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate)

Protein crystallography data

The structure of Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate), PDB code: 3ate was solved by A.Inanobe, Y.Kurachi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.47 / 3.20
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 82.775, 82.775, 172.894, 90.00, 90.00, 90.00
R / Rfree (%) 26.7 / 32.5

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate) (pdb code 3ate). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 3 binding sites of Praseodymium where determined in the Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate), PDB code: 3ate:
Jump to Praseodymium binding site number: 1; 2; 3;

Praseodymium binding site 1 out of 3 in 3ate

Go back to Praseodymium Binding Sites List in 3ate
Praseodymium binding site 1 out of 3 in the Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate)


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr1

b:0.9
occ:0.25
OE2 A:GLU236 2.9 76.5 1.0
OE1 A:GLU236 3.3 77.0 1.0
CD A:GLU236 3.5 76.7 1.0

Praseodymium binding site 2 out of 3 in 3ate

Go back to Praseodymium Binding Sites List in 3ate
Praseodymium binding site 2 out of 3 in the Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate)


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr2

b:0.2
occ:1.00
OE2 A:GLU358 2.8 68.1 1.0
OE1 A:GLU358 3.0 68.4 1.0
CD A:GLU358 3.2 67.9 1.0
OG A:SER355 3.5 66.6 1.0
CG A:GLU358 4.7 64.1 1.0
CB A:SER355 4.8 65.9 1.0

Praseodymium binding site 3 out of 3 in 3ate

Go back to Praseodymium Binding Sites List in 3ate
Praseodymium binding site 3 out of 3 in the Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate)


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 3 of Crystal Structure of the KIR3.2 Cytoplasmic Domain (Na+-Free Crystal Soaked in 10 Mm Praseodymium (III) Acetate) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr3

b:0.3
occ:1.00
OE2 A:GLU345 3.5 79.8 1.0
CD A:GLU345 4.2 80.1 1.0
OE1 A:GLU345 4.3 80.1 1.0

Reference:

A.Inanobe, A.Nakagawa, Y.Kurachi. Interactions of Cations with the Cytoplasmic Pores of Inward Rectifier K(+) Channels in the Closed State J.Biol.Chem. V. 286 41801 2011.
ISSN: ISSN 0021-9258
PubMed: 21982822
DOI: 10.1074/JBC.M111.278531
Page generated: Thu Oct 29 06:39:21 2020

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