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  Praseodymium
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    PDB 1k0z-4flb
      1k0z
      2f1r
      2if5
      2isn
      2vsy
      2vxb
      2vxc
      2wvi
      2znr
      3fou
      3mvc
      4afi
      4flb

Praseodymium in the structure of Low pH Structure of the Rieske Protein From Thermus Thermophilus At 2.1 A (pdb 3fou)






The binding sites of Praseodymium atom in the structure of Low pH Structure of the Rieske Protein From Thermus Thermophilus At 2.1 A (pdb code 3fou). This binding sites where shown with 5.0 Angstroms radius around Praseodymium atom.
The 3fou structure was solved by L.M.HUNSICKER-WANG, A.B.TAYLOR, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)58.8-2.1
Space groupP21212
a (A)113.152
b (A)58.512
c (A)58.798
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)19.8
Rfree (%)24.6


Praseodymium Binding Sites:

Praseodymium binding site 1 out of 7 in 3fou


Praseodymium binding site 1 out of 7 in 3fou
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stereopicture of Praseodymium binding site 1 out of 7 in 3fou
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Praseodymium in the PDB 3fou. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu66, A: Hoh30, A: Hoh203, A: Hoh224, A: Hoh227,

conact list:


AtomAtomDistance (A)
PrOE1 A:Glu662.69
PrOE2 A:Glu662.65
PrCD A:Glu663.02
PrCG A:Glu664.48
PrO A:Hoh303.88
PrO A:Hoh2032.48
PrO A:Hoh2244.99
PrO A:Hoh2272.51

interactive model:


Praseodymium binding site 2 out of 7 in 3fou


Praseodymium binding site 2 out of 7 in 3fou
Click to enlarge
stereopicture of Praseodymium binding site 2 out of 7 in 3fou
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Praseodymium in the PDB 3fou. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp109, A: Glu111, A: Act213, A: Hoh20, A: Hoh210, A: Hoh226, A: Hoh234,

conact list:


AtomAtomDistance (A)
PrCB A:Asp1094.51
PrOD2 A:Asp1092.55
PrOD1 A:Asp1092.81
PrCG A:Asp1093.02
PrN A:Glu1114.91
PrOE1 A:Glu1112.09
PrCB A:Glu1114.51
PrOE2 A:Glu1114.14
PrCD A:Glu1113.37
PrCG A:Glu1114.41
PrO A:Act2131.83
PrCH3 A:Act2134.18
PrC A:Act2132.74
PrOXT A:Act2132.85
PrO A:Hoh204.98
PrO A:Hoh2101.82
PrO A:Hoh2264.24
PrO A:Hoh2344.61

interactive model:


Praseodymium binding site 3 out of 7 in 3fou


Praseodymium binding site 3 out of 7 in 3fou
Click to enlarge
stereopicture of Praseodymium binding site 3 out of 7 in 3fou
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Praseodymium in the PDB 3fou. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu116, A: Gln119, A: His120, A: Hoh216, A: Hoh228,

conact list:


AtomAtomDistance (A)
PrOE1 A:Glu1162.87
PrOE2 A:Glu1162.66
PrCD A:Glu1163.13
PrCG A:Glu1164.64
PrNE2 A:Gln1192.81
PrOE1 A:Gln1192.86
PrCD A:Gln1193.03
PrCG A:Gln1194.30
PrNE2 A:His1204.72
PrO A:Hoh2163.95
PrO A:Hoh2282.60

interactive model:


Praseodymium binding site 4 out of 7 in 3fou


Praseodymium binding site 4 out of 7 in 3fou
Click to enlarge
stereopicture of Praseodymium binding site 4 out of 7 in 3fou
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Praseodymium in the PDB 3fou. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu112, A: Glu147, A: Arg161, A: Hoh211, A: Hoh233,

conact list:


AtomAtomDistance (A)
PrOE1 A:Glu1122.52
PrCB A:Glu1124.88
PrOE2 A:Glu1122.34
PrCD A:Glu1122.78
PrCG A:Glu1124.27
PrOE1 A:Glu1472.68
PrOE2 A:Glu1472.73
PrCD A:Glu1473.02
PrCG A:Glu1474.50
PrNE A:Arg1614.90
PrNH2 A:Arg1614.29
PrO A:Hoh2112.16
PrO A:Hoh2331.45

interactive model:


Praseodymium binding site 5 out of 7 in 3fou


Praseodymium binding site 5 out of 7 in 3fou
Click to enlarge
stereopicture of Praseodymium binding site 5 out of 7 in 3fou
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Praseodymium in the PDB 3fou. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu183, A: Asp184, A: Act214, A: Hoh231,

conact list:


AtomAtomDistance (A)
PrOE1 A:Glu1834.23
PrOE2 A:Glu1832.70
PrCD A:Glu1833.80
PrCB A:Asp1844.59
PrOD2 A:Asp1842.73
PrOD1 A:Asp1842.78
PrCG A:Asp1843.12
PrO A:Act2143.32
PrC A:Act2143.74
PrOXT A:Act2143.36
PrO A:Hoh2313.79

interactive model:


Praseodymium binding site 6 out of 7 in 3fou


Praseodymium binding site 6 out of 7 in 3fou
Click to enlarge
stereopicture of Praseodymium binding site 6 out of 7 in 3fou
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Praseodymium in the PDB 3fou. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Arg181, B: Glu183, B: Hoh212, B: Hoh227, B: Hoh239, B: Hoh240,

conact list:


AtomAtomDistance (A)
PrNH1 B:Arg1814.82
PrOE1 B:Glu1832.65
PrOE2 B:Glu1832.90
PrCD B:Glu1833.14
PrCG B:Glu1834.64
PrO B:Hoh2124.35
PrO B:Hoh2273.20
PrO B:Hoh2394.79
PrO B:Hoh2402.09

interactive model:


Praseodymium binding site 7 out of 7 in 3fou


Praseodymium binding site 7 out of 7 in 3fou
Click to enlarge
stereopicture of Praseodymium binding site 7 out of 7 in 3fou
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Praseodymium in the PDB 3fou. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Praseodymium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp184, B: Hoh239, B: Hoh241,

conact list:


AtomAtomDistance (A)
PrOD2 B:Asp1843.76
PrOD1 B:Asp1844.04
PrCG B:Asp1844.04
PrO B:Hoh2394.12
PrO B:Hoh2413.42

interactive model:




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