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Praseodymium in PDB 3fou: Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A

Protein crystallography data

The structure of Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A, PDB code: 3fou was solved by L.M.Hunsicker-Wang, A.B.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.80 / 2.10
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 113.152, 58.512, 58.798, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24.6

Other elements in 3fou:

The structure of Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Calcium (Ca) 2 atoms

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A (pdb code 3fou). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 7 binding sites of Praseodymium where determined in the Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A, PDB code: 3fou:
Jump to Praseodymium binding site number: 1; 2; 3; 4; 5; 6; 7;

Praseodymium binding site 1 out of 7 in 3fou

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Praseodymium binding site 1 out of 7 in the Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr205

b:45.6
occ:1.00
O A:HOH203 2.5 35.8 1.0
O A:HOH227 2.5 37.6 1.0
OE2 A:GLU66 2.7 38.9 1.0
OE1 A:GLU66 2.7 34.6 1.0
CD A:GLU66 3.0 36.5 1.0
O A:HOH30 3.9 43.3 1.0
CG A:GLU66 4.5 35.0 1.0
O A:HOH224 5.0 50.6 1.0

Praseodymium binding site 2 out of 7 in 3fou

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Praseodymium binding site 2 out of 7 in the Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr206

b:41.0
occ:1.00
O A:HOH210 1.8 27.0 1.0
O A:ACT213 1.8 45.9 1.0
OE1 A:GLU111 2.1 37.8 1.0
OD2 A:ASP109 2.5 33.7 1.0
C A:ACT213 2.7 47.4 1.0
OD1 A:ASP109 2.8 36.4 1.0
OXT A:ACT213 2.8 46.0 1.0
CG A:ASP109 3.0 34.0 1.0
CD A:GLU111 3.4 41.9 1.0
OE2 A:GLU111 4.1 44.0 1.0
CH3 A:ACT213 4.2 46.2 1.0
O A:HOH226 4.2 45.0 1.0
CG A:GLU111 4.4 39.4 1.0
CB A:ASP109 4.5 35.6 1.0
CB A:GLU111 4.5 38.0 1.0
O A:HOH234 4.6 34.5 1.0
N A:GLU111 4.9 36.3 1.0
O A:HOH20 5.0 34.9 1.0

Praseodymium binding site 3 out of 7 in 3fou

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Praseodymium binding site 3 out of 7 in the Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 3 of Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr207

b:78.8
occ:0.50
O A:HOH228 2.6 55.8 1.0
OE2 A:GLU116 2.7 48.8 0.7
NE2 A:GLN119 2.8 57.2 1.0
OE1 A:GLN119 2.9 56.7 1.0
OE1 A:GLU116 2.9 48.2 0.7
CD A:GLN119 3.0 55.7 1.0
CD A:GLU116 3.1 48.5 0.7
O A:HOH216 3.9 34.1 0.5
CG A:GLN119 4.3 49.8 1.0
CG A:GLU116 4.6 46.7 0.7
NE2 A:HIS120 4.7 46.8 1.0

Praseodymium binding site 4 out of 7 in 3fou

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Praseodymium binding site 4 out of 7 in the Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 4 of Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr208

b:41.1
occ:1.00
O A:HOH233 1.5 27.5 1.0
O A:HOH211 2.2 28.9 1.0
OE2 A:GLU112 2.3 31.6 1.0
OE1 A:GLU112 2.5 35.8 1.0
OE1 A:GLU147 2.7 36.4 1.0
OE2 A:GLU147 2.7 28.9 1.0
CD A:GLU112 2.8 33.4 1.0
CD A:GLU147 3.0 31.7 1.0
CG A:GLU112 4.3 33.8 1.0
NH2 A:ARG161 4.3 43.4 1.0
CG A:GLU147 4.5 30.6 1.0
CB A:GLU112 4.9 36.7 1.0
NE A:ARG161 4.9 43.1 1.0

Praseodymium binding site 5 out of 7 in 3fou

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Praseodymium binding site 5 out of 7 in the Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 5 of Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr209

b:65.7
occ:1.00
OE2 A:GLU183 2.7 59.1 1.0
OD2 A:ASP184 2.7 52.0 1.0
OD1 A:ASP184 2.8 52.4 1.0
CG A:ASP184 3.1 49.8 1.0
O A:ACT214 3.3 70.2 1.0
OXT A:ACT214 3.4 70.9 1.0
C A:ACT214 3.7 70.9 1.0
O A:HOH231 3.8 63.5 1.0
CD A:GLU183 3.8 57.9 1.0
OE1 A:GLU183 4.2 62.1 1.0
CB A:ASP184 4.6 46.5 1.0

Praseodymium binding site 6 out of 7 in 3fou

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Praseodymium binding site 6 out of 7 in the Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 6 of Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr210

b:72.5
occ:0.50
O B:HOH240 2.1 44.9 1.0
OE1 B:GLU183 2.6 56.3 1.0
OE2 B:GLU183 2.9 49.2 1.0
CD B:GLU183 3.1 51.5 1.0
O B:HOH227 3.2 46.4 1.0
O B:HOH212 4.4 46.0 1.0
CG B:GLU183 4.6 47.6 1.0
O B:HOH239 4.8 40.9 1.0
NH1 B:ARG181 4.8 41.7 1.0

Praseodymium binding site 7 out of 7 in 3fou

Go back to Praseodymium Binding Sites List in 3fou
Praseodymium binding site 7 out of 7 in the Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 7 of Low pH Structure of the Rieske Protein From Thermus Thermophilus at 2.1 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr210

b:0.6
occ:0.50
O B:HOH241 3.4 52.1 1.0
OD2 B:ASP184 3.8 48.6 1.0
CG B:ASP184 4.0 44.7 1.0
OD1 B:ASP184 4.0 47.2 1.0
O B:HOH239 4.1 40.9 1.0

Reference:

M.E.Konkle, S.K.Muellner, A.L.Schwander, M.M.Dicus, R.Pokhrel, R.D.Britt, A.B.Taylor, L.M.Hunsicker-Wang. Effects of pH on the Rieske Protein From Thermus Thermophilus: A Spectroscopic and Structural Analysis Biochemistry V. 48 9848 2009.
ISSN: ISSN 0006-2960
PubMed: 19772300
DOI: 10.1021/BI901126U
Page generated: Wed Dec 16 02:02:58 2020

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