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Praseodymium in PDB 3r79: Crystal Structure of An Uncharactertized Protein From Agrobacterium Tumefaciens

Protein crystallography data

The structure of Crystal Structure of An Uncharactertized Protein From Agrobacterium Tumefaciens, PDB code: 3r79 was solved by S.Eswaramoorthy, S.C.Almo, S.Swaminathan, New York Structural Genomicsresearch Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.687, 89.128, 109.731, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 24.5

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Crystal Structure of An Uncharactertized Protein From Agrobacterium Tumefaciens (pdb code 3r79). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Crystal Structure of An Uncharactertized Protein From Agrobacterium Tumefaciens, PDB code: 3r79:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 3r79

Go back to Praseodymium Binding Sites List in 3r79
Praseodymium binding site 1 out of 2 in the Crystal Structure of An Uncharactertized Protein From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of An Uncharactertized Protein From Agrobacterium Tumefaciens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr243

b:29.3
occ:1.00
OE2 A:GLU9 2.6 20.1 1.0
OE2 A:GLU5 2.6 27.0 1.0
OE2 B:GLU204 2.7 18.9 1.0
OE1 B:GLU204 2.7 14.1 1.0
OE1 A:GLU9 2.8 19.6 1.0
O B:HOH282 2.9 37.0 1.0
O B:HOH321 2.9 36.2 1.0
O A:HOH247 2.9 40.7 1.0
CD A:GLU9 3.0 20.9 1.0
CD B:GLU204 3.0 16.9 1.0
O A:HOH332 3.0 38.6 1.0
CD A:GLU5 3.7 29.8 1.0
CG A:GLU5 4.4 26.7 1.0
CG A:GLU9 4.5 18.8 1.0
CG B:GLU204 4.5 15.4 1.0
OE1 A:GLU5 4.6 30.2 1.0
OG1 B:THR201 4.7 19.1 1.0
NZ B:LYS21 4.8 35.1 1.0

Praseodymium binding site 2 out of 2 in 3r79

Go back to Praseodymium Binding Sites List in 3r79
Praseodymium binding site 2 out of 2 in the Crystal Structure of An Uncharactertized Protein From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Crystal Structure of An Uncharactertized Protein From Agrobacterium Tumefaciens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr243

b:47.8
occ:1.00
O1P B:PLP258 2.4 19.5 1.0
O B:HOH304 2.8 30.4 1.0
O B:HOH303 2.8 20.1 1.0
O B:ACT244 3.0 27.4 1.0
O B:HOH320 3.0 38.0 1.0
OXT B:ACT244 3.1 31.1 1.0
C B:ACT244 3.4 30.4 1.0
P B:PLP258 3.8 21.1 1.0
O2P B:PLP258 4.1 18.8 1.0
O4P B:PLP258 4.3 18.5 1.0
NH2 B:ARG220 4.4 13.8 1.0
O3P B:PLP258 4.8 19.4 1.0
OG B:SER214 4.8 22.9 1.0
CH3 B:ACT244 4.9 28.2 1.0
CB B:SER196 4.9 14.5 1.0

Reference:

S.Eswaramoorthy, S.C.Almo, S.Swaminathan. Crystal Structure of An Uncharactertized Protein From Agrobacterium Tumefaciens To Be Published.
Page generated: Wed Dec 16 02:03:00 2020

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