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Praseodymium in PDB 3u3l: Crystal Structure of the Selenomethionine Derivative of Tablysin-15

Protein crystallography data

The structure of Crystal Structure of the Selenomethionine Derivative of Tablysin-15, PDB code: 3u3l was solved by J.F.Andersen, X.Xu, J.M.Ribeiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.74 / 1.57
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.556, 69.556, 86.209, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 21.1

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Crystal Structure of the Selenomethionine Derivative of Tablysin-15 (pdb code 3u3l). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total only one binding site of Praseodymium was determined in the Crystal Structure of the Selenomethionine Derivative of Tablysin-15, PDB code: 3u3l:

Praseodymium binding site 1 out of 1 in 3u3l

Go back to Praseodymium Binding Sites List in 3u3l
Praseodymium binding site 1 out of 1 in the Crystal Structure of the Selenomethionine Derivative of Tablysin-15


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of the Selenomethionine Derivative of Tablysin-15 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pr234

b:23.6
occ:1.00
OE2 C:GLU34 2.3 21.0 1.0
O C:HOH381 2.4 31.7 1.0
O7 C:CIT236 2.4 18.6 1.0
O4 C:CIT235 2.4 26.5 1.0
O C:HOH371 2.4 30.2 1.0
O2 C:CIT236 2.4 29.4 1.0
O7 C:CIT235 2.6 27.9 1.0
O6 C:CIT236 2.7 27.9 1.0
O6 C:CIT235 2.8 24.1 1.0
C3 C:CIT236 3.3 23.9 1.0
C6 C:CIT236 3.4 27.9 1.0
C6 C:CIT235 3.5 25.1 1.0
C3 C:CIT235 3.5 28.7 1.0
C1 C:CIT236 3.5 32.7 1.0
C5 C:CIT235 3.5 28.0 1.0
CD C:GLU34 3.6 23.4 1.0
C2 C:CIT236 4.0 26.1 1.0
C4 C:CIT235 4.1 27.3 1.0
OE1 C:GLU34 4.2 28.6 1.0
O3 C:CIT236 4.3 28.4 1.0
O3 C:CIT235 4.5 30.5 1.0
O2 C:CIT235 4.6 33.3 1.0
O1 C:CIT236 4.6 38.5 1.0
O5 C:CIT236 4.6 29.1 1.0
O5 C:CIT235 4.7 22.7 1.0
CG C:GLU34 4.7 21.7 1.0
C4 C:CIT236 4.7 23.2 1.0
C2 C:CIT235 4.9 30.9 1.0
C5 C:CIT236 5.0 26.8 1.0

Reference:

X.Xu, I.M.Francischetti, R.Lai, J.M.Ribeiro, J.F.Andersen. Structure of Protein Having Inhibitory Disintegrin and Leukotriene Scavenging Functions Contained in Single Domain. J.Biol.Chem. V. 287 10967 2012.
ISSN: ISSN 0021-9258
PubMed: 22311975
DOI: 10.1074/JBC.M112.340471
Page generated: Wed Dec 16 02:03:00 2020

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