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Praseodymium in PDB 4flb: Cid of Human RPRD2

Protein crystallography data

The structure of Cid of Human RPRD2, PDB code: 4flb was solved by Z.Ni, C.Xu, W.Tempel, M.El Bakkouri, P.Loppnau, X.Guo, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, J.F.Greenblatt, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.54 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 40.339, 40.339, 145.750, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 21.6

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Cid of Human RPRD2 (pdb code 4flb). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Cid of Human RPRD2, PDB code: 4flb:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 4flb

Go back to Praseodymium Binding Sites List in 4flb
Praseodymium binding site 1 out of 2 in the Cid of Human RPRD2


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Cid of Human RPRD2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr203

b:25.5
occ:0.40
OD2 A:ASP28 2.3 26.3 1.0
OE1 A:GLU24 2.6 45.2 1.0
OE2 A:GLU24 2.8 43.8 1.0
CD A:GLU24 3.1 40.4 1.0
CG A:ASP28 3.5 24.7 1.0
CB A:ASP28 4.2 23.0 1.0
OD1 A:ASP28 4.5 24.5 1.0
CG A:GLU24 4.6 33.8 1.0
PR A:PR204 4.9 48.3 0.3

Praseodymium binding site 2 out of 2 in 4flb

Go back to Praseodymium Binding Sites List in 4flb
Praseodymium binding site 2 out of 2 in the Cid of Human RPRD2


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Cid of Human RPRD2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr204

b:48.3
occ:0.30
OE2 A:GLU24 2.9 43.8 1.0
CD A:GLU24 4.0 40.4 1.0
NZ A:LYS64 4.1 30.2 1.0
CG A:GLU24 4.5 33.8 1.0
CD A:LYS64 4.8 26.0 1.0
PR A:PR203 4.9 25.5 0.4
OE1 A:GLU24 5.0 45.2 1.0

Reference:

Z.Ni, C.Xu, X.Guo, G.O.Hunter, O.V.Kuznetsova, W.Tempel, E.Marcon, G.Zhong, H.Guo, W.H.Kuo, J.Li, P.Young, J.B.Olsen, C.Wan, P.Loppnau, M.El Bakkouri, G.A.Senisterra, H.He, H.Huang, S.S.Sidhu, A.Emili, S.Murphy, A.L.Mosley, C.H.Arrowsmith, J.Min, J.F.Greenblatt. RPRD1A and RPRD1B Are Human Rna Polymerase II C-Terminal Domain Scaffolds For SER5 Dephosphorylation. Nat.Struct.Mol.Biol. V. 21 686 2014.
ISSN: ISSN 1545-9993
PubMed: 24997600
DOI: 10.1038/NSMB.2853
Page generated: Thu Oct 29 06:39:26 2020

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