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Praseodymium in PDB 4icv: Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B

Protein crystallography data

The structure of Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B, PDB code: 4icv was solved by R.Janowski, M.Boutin, J.C.Zabala, M.Coll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.45
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 42.270, 65.830, 73.570, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 18.9

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B (pdb code 4icv). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 6 binding sites of Praseodymium where determined in the Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B, PDB code: 4icv:
Jump to Praseodymium binding site number: 1; 2; 3; 4; 5; 6;

Praseodymium binding site 1 out of 6 in 4icv

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Praseodymium binding site 1 out of 6 in the Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr601

b:21.2
occ:0.31
PR A:PR601 0.0 21.2 0.3
PR A:PR601 0.9 18.9 0.2
O A:HOH752 2.3 23.6 1.0
O A:HOH702 2.3 39.0 1.0
O A:HOH723 2.5 18.6 0.8
O A:HOH737 3.0 29.9 1.0
O A:HOH783 3.0 51.7 0.5
PR A:PR602 3.3 72.8 0.2
O A:HOH723 3.4 7.2 0.2
OE1 A:GLU494 4.4 25.7 0.5
OD2 A:ASP457 4.5 30.5 1.0
OE2 A:GLU494 4.6 27.9 0.3
OE1 A:GLU494 4.7 21.3 0.2
OD1 A:ASP457 4.8 23.7 1.0
OE2 A:GLU494 4.9 22.1 0.3

Praseodymium binding site 2 out of 6 in 4icv

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Praseodymium binding site 2 out of 6 in the Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr601

b:18.9
occ:0.17
PR A:PR601 0.0 18.9 0.2
PR A:PR601 0.9 21.2 0.3
O A:HOH723 2.2 18.6 0.8
O A:HOH752 2.3 23.6 1.0
PR A:PR602 2.5 72.8 0.2
O A:HOH723 2.9 7.2 0.2
O A:HOH702 3.0 39.0 1.0
O A:HOH737 3.1 29.9 1.0
O A:HOH783 3.7 51.7 0.5
OE2 A:GLU494 4.7 27.9 0.3
OE1 A:GLU494 4.7 21.3 0.2
OD2 A:ASP457 4.8 30.5 1.0
OE1 A:GLU494 4.8 25.7 0.5
OD1 A:ASP457 4.9 23.7 1.0

Praseodymium binding site 3 out of 6 in 4icv

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Praseodymium binding site 3 out of 6 in the Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 3 of Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr602

b:72.8
occ:0.20
O A:HOH723 1.9 7.2 0.2
PR A:PR601 2.5 18.9 0.2
O A:HOH723 2.5 18.6 0.8
O A:HOH752 2.8 23.6 1.0
PR A:PR601 3.3 21.2 0.3
OE2 A:GLU494 4.5 27.9 0.3
O A:HOH738 4.5 18.4 1.0
OE1 A:GLU494 4.6 21.3 0.2
O A:HOH702 4.8 39.0 1.0
O A:HOH737 4.8 29.9 1.0

Praseodymium binding site 4 out of 6 in 4icv

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Praseodymium binding site 4 out of 6 in the Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 4 of Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr603

b:18.8
occ:0.33
PR A:PR603 0.0 18.8 0.3
PR A:PR603 0.5 15.7 0.3
PR A:PR603 1.1 21.8 0.3
O A:HOH810 1.9 2.0 0.4
O A:HOH811 2.1 3.6 0.5
O A:HOH736 2.1 28.7 1.0
O A:HOH726 2.2 26.9 1.0
O A:HOH754 2.5 17.2 0.9
O A:HOH812 2.9 45.0 1.0
O A:HOH741 2.9 17.3 1.0
O A:HOH797 3.0 18.6 1.0
O A:HOH798 3.0 26.6 1.0
O A:HOH753 3.2 22.6 1.0
O A:HOH725 3.5 24.8 1.0
O A:HOH808 4.2 41.5 1.0
OXT A:TRP527 4.6 28.1 1.0
O A:TRP527 4.7 28.9 1.0

Praseodymium binding site 5 out of 6 in 4icv

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Praseodymium binding site 5 out of 6 in the Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 5 of Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr603

b:15.7
occ:0.33
PR A:PR603 0.0 15.7 0.3
PR A:PR603 0.5 18.8 0.3
PR A:PR603 0.5 21.8 0.3
O A:HOH811 1.9 3.6 0.5
O A:HOH810 2.0 2.0 0.4
O A:HOH736 2.5 28.7 1.0
O A:HOH754 2.6 17.2 0.9
O A:HOH797 2.6 18.6 1.0
O A:HOH741 2.6 17.3 1.0
O A:HOH726 2.7 26.9 1.0
O A:HOH812 2.8 45.0 1.0
O A:HOH753 2.8 22.6 1.0
O A:HOH725 3.0 24.8 1.0
O A:HOH798 3.4 26.6 1.0
O A:HOH808 3.8 41.5 1.0
OXT A:TRP527 4.5 28.1 1.0
O A:TRP527 4.5 28.9 1.0

Praseodymium binding site 6 out of 6 in 4icv

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Praseodymium binding site 6 out of 6 in the Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 6 of Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - Crystal Form B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr603

b:21.8
occ:0.33
PR A:PR603 0.0 21.8 0.3
PR A:PR603 0.5 15.7 0.3
PR A:PR603 1.1 18.8 0.3
O A:HOH811 1.8 3.6 0.5
O A:HOH810 2.1 2.0 0.4
O A:HOH797 2.3 18.6 1.0
O A:HOH753 2.4 22.6 1.0
O A:HOH741 2.4 17.3 1.0
O A:HOH725 2.4 24.8 1.0
O A:HOH812 2.7 45.0 1.0
O A:HOH754 2.8 17.2 0.9
O A:HOH736 3.0 28.7 1.0
O A:HOH726 3.2 26.9 1.0
O A:HOH808 3.4 41.5 1.0
O A:HOH798 3.8 26.6 1.0
O A:TRP527 4.5 28.9 1.0
OXT A:TRP527 4.5 28.1 1.0
C A:TRP527 5.0 27.6 1.0

Reference:

R.Janowski, M.Boutin, J.C.Zabala, M.Coll. Ubiquitin-Like Domain of Human Tubulin Folding Cofactor E - the Structural Analysis By X-Ray Diffraction To Be Published.
Page generated: Thu Oct 29 06:39:26 2020

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