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Praseodymium in PDB 4p3w: Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide

Protein crystallography data

The structure of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide, PDB code: 4p3w was solved by J.Seppala, U.Pentikainen, J.Ylanne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.86 / 2.00
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 88.154, 88.154, 394.709, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 22.6

Other elements in 4p3w:

The structure of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide (pdb code 4p3w). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 4 binding sites of Praseodymium where determined in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide, PDB code: 4p3w:
Jump to Praseodymium binding site number: 1; 2; 3; 4;

Praseodymium binding site 1 out of 4 in 4p3w

Go back to Praseodymium Binding Sites List in 4p3w
Praseodymium binding site 1 out of 4 in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr2402

b:53.5
occ:1.00
O B:HOH2503 2.3 21.5 1.0
O B:HOH2507 2.5 30.7 1.0
CB B:SER2329 2.8 45.0 1.0
OG B:SER2329 3.5 49.1 1.0
CA B:SER2329 4.2 48.2 1.0
OE2 B:GLU2252 4.3 45.1 1.0
OE1 B:GLU2252 4.5 46.5 1.0
N B:SER2329 4.7 46.2 1.0
CD B:GLU2252 4.8 43.6 1.0

Praseodymium binding site 2 out of 4 in 4p3w

Go back to Praseodymium Binding Sites List in 4p3w
Praseodymium binding site 2 out of 4 in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr2402

b:53.7
occ:1.00
OD1 B:ASP2173 2.2 50.3 1.0
O B:HOH2504 2.4 23.1 1.0
CG B:ASP2173 3.3 52.0 1.0
OD2 B:ASP2173 3.7 52.8 1.0
CB B:ASP2173 4.4 51.2 1.0
O B:GLN2172 4.6 54.5 1.0
CA B:ASP2173 4.8 49.4 1.0

Praseodymium binding site 3 out of 4 in 4p3w

Go back to Praseodymium Binding Sites List in 4p3w
Praseodymium binding site 3 out of 4 in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 3 of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Pr2403

b:45.5
occ:1.00
O E:HOH2503 2.0 35.0 1.0
O F:HOH2502 2.4 29.4 1.0
OE1 F:GLU2306 2.5 46.4 1.0
OE2 E:GLU2306 2.6 32.4 1.0
OE1 F:GLU2276 2.6 36.5 1.0
OE1 E:GLU2306 2.9 31.8 1.0
CD E:GLU2306 3.1 34.7 1.0
CD F:GLU2306 3.3 43.5 1.0
OE2 F:GLU2306 3.5 47.8 1.0
CD F:GLU2276 3.7 36.0 1.0
OE1 E:GLU2276 4.1 47.9 1.0
OE2 F:GLU2276 4.1 36.3 1.0
CG F:GLU2306 4.6 40.4 1.0
CG E:GLU2306 4.7 32.9 1.0
CG F:GLU2276 5.0 33.8 1.0
CG E:PRO2320 5.0 38.2 1.0

Praseodymium binding site 4 out of 4 in 4p3w

Go back to Praseodymium Binding Sites List in 4p3w
Praseodymium binding site 4 out of 4 in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 4 of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Pr2401

b:57.2
occ:1.00
OE1 D:GLU2306 2.5 38.3 1.0
O D:HOH2506 2.6 32.8 1.0
OE1 C:GLU2306 2.6 53.3 1.0
O C:HOH2517 3.0 45.8 1.0
OE2 D:GLU2276 3.2 42.9 1.0
CD D:GLU2306 3.3 43.6 1.0
CD C:GLU2306 3.4 48.2 1.0
OE2 C:GLU2306 3.4 53.5 1.0
OE2 D:GLU2306 3.6 48.1 1.0
OE1 D:GLU2276 3.8 42.9 1.0
CD D:GLU2276 3.8 41.5 1.0
OE1 C:GLU2276 3.9 45.9 1.0
CG D:GLU2306 4.7 39.3 1.0
O D:HOH2502 4.7 33.0 1.0
CG C:GLU2306 4.8 44.2 1.0
CG C:PRO2320 5.0 44.5 1.0
OG C:SER2308 5.0 37.4 1.0

Reference:

J.Seppala, U.Pentikainen, J.Ylanne. Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide To Be Published.
Page generated: Thu Oct 29 06:39:28 2020

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