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Praseodymium in PDB 4wsz: Crystal Structure of the Dna Binding Domains of Wild Type Liar From E. Faecalis

Protein crystallography data

The structure of Crystal Structure of the Dna Binding Domains of Wild Type Liar From E. Faecalis, PDB code: 4wsz was solved by M.Davlieva, Y.Shamoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.95 / 1.77
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 31.232, 77.024, 77.190, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20.8

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Crystal Structure of the Dna Binding Domains of Wild Type Liar From E. Faecalis (pdb code 4wsz). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Crystal Structure of the Dna Binding Domains of Wild Type Liar From E. Faecalis, PDB code: 4wsz:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 4wsz

Go back to Praseodymium Binding Sites List in 4wsz
Praseodymium binding site 1 out of 2 in the Crystal Structure of the Dna Binding Domains of Wild Type Liar From E. Faecalis


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of the Dna Binding Domains of Wild Type Liar From E. Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr300

b:16.7
occ:1.00
O A:HOH420 2.3 22.3 1.0
OD2 A:ASP190 2.5 21.4 1.0
O A:HOH416 2.5 21.9 1.0
OD1 A:ASP190 3.0 23.5 1.0
CG A:ASP190 3.1 22.5 1.0
O2 A:GOL301 4.1 24.3 1.0
O A:HOH492 4.3 49.9 1.0
O A:HOH431 4.5 29.0 1.0
OE1 A:GLN194 4.5 15.8 1.0
NE2 A:GLN194 4.6 21.7 1.0
CB A:ASP190 4.6 17.9 1.0
O B:HOH418 4.8 26.6 1.0
O A:HOH429 4.8 25.4 1.0
O A:ASP188 4.9 18.1 1.0
O A:HOH426 4.9 20.6 1.0
O3 A:GOL301 5.0 20.4 1.0

Praseodymium binding site 2 out of 2 in 4wsz

Go back to Praseodymium Binding Sites List in 4wsz
Praseodymium binding site 2 out of 2 in the Crystal Structure of the Dna Binding Domains of Wild Type Liar From E. Faecalis


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Crystal Structure of the Dna Binding Domains of Wild Type Liar From E. Faecalis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr300

b:20.8
occ:1.00
O B:ACT301 2.2 17.5 1.0
OD1 B:ASP190 2.3 17.4 1.0
OXT B:ACT301 2.5 12.1 1.0
O B:HOH414 2.6 16.4 1.0
O B:HOH409 2.6 12.4 1.0
C B:ACT301 2.6 16.5 1.0
OD2 B:ASP190 2.7 14.3 1.0
CG B:ASP190 2.8 14.1 1.0
CH3 B:ACT301 4.0 18.0 1.0
O B:HOH407 4.3 19.6 1.0
CB B:ASP190 4.3 15.1 1.0
O A:HOH401 4.4 24.2 1.0
OE1 B:GLN194 4.5 14.8 1.0
O A:HOH408 4.7 20.2 1.0
O B:HOH408 4.8 18.8 1.0
N B:ASP190 4.8 14.4 1.0
NE2 B:GLN194 4.9 14.6 1.0
O B:HOH427 5.0 24.8 1.0

Reference:

M.Davlieva, Y.Shi, P.G.Leonard, T.A.Johnson, M.R.Zianni, C.A.Arias, J.E.Ladbury, Y.Shamoo. A Variable Dna Recognition Site Organization Establishes the Liar-Mediated Cell Envelope Stress Response of Enterococci to Daptomycin. Nucleic Acids Res. 2015.
ISSN: ESSN 1362-4962
PubMed: 25897118
DOI: 10.1093/NAR/GKV321
Page generated: Thu Oct 29 06:39:28 2020

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