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Praseodymium in PDB 5h13: Eed in Complex with PRC2 Allosteric Inhibitor EED396

Protein crystallography data

The structure of Eed in Complex with PRC2 Allosteric Inhibitor EED396, PDB code: 5h13 was solved by K.Zhao, M.Zhao, X.Luo, H.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.36 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 150.670, 45.970, 51.750, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 22.9

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Eed in Complex with PRC2 Allosteric Inhibitor EED396 (pdb code 5h13). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total only one binding site of Praseodymium was determined in the Eed in Complex with PRC2 Allosteric Inhibitor EED396, PDB code: 5h13:

Praseodymium binding site 1 out of 1 in 5h13

Go back to Praseodymium Binding Sites List in 5h13
Praseodymium binding site 1 out of 1 in the Eed in Complex with PRC2 Allosteric Inhibitor EED396


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Eed in Complex with PRC2 Allosteric Inhibitor EED396 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr502

b:26.6
occ:0.42
O A:HOH608 2.0 25.9 1.0
O A:HOH635 2.2 32.9 1.0
O A:GLU392 2.4 26.1 1.0
OE2 A:GLU394 2.4 34.7 1.0
CD A:GLU394 3.5 48.8 1.0
C A:GLU392 3.6 31.0 1.0
OE1 A:GLU394 3.8 44.9 1.0
CA A:VAL393 4.4 30.9 1.0
N A:GLU394 4.4 34.8 1.0
N A:VAL393 4.5 30.4 1.0
CB A:GLU392 4.6 26.1 1.0
CA A:GLU392 4.6 25.0 1.0
O A:HOH666 4.6 48.9 1.0
CG A:GLU394 4.8 41.4 1.0

Reference:

L.Li, H.Zhang, M.Zhang, M.Zhao, L.Feng, X.Luo, Z.Gao, Y.Huang, O.Ardayfio, J.H.Zhang, Y.Lin, H.Fan, Y.Mi, G.Li, L.Liu, L.Feng, F.Luo, L.Teng, W.Qi, J.Ottl, A.Lingel, D.E.Bussiere, Z.Yu, P.Atadja, C.Lu, E.Li, J.Gu, K.Zhao. Discovery and Molecular Basis of A Diverse Set of Polycomb Repressive Complex 2 Inhibitors Recognition By Eed Plos One V. 12 69855 2017.
ISSN: ESSN 1932-6203
PubMed: 28072869
DOI: 10.1371/JOURNAL.PONE.0169855
Page generated: Thu Oct 29 06:39:29 2020

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