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Praseodymium in PDB 5ngy: Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M

Protein crystallography data

The structure of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M, PDB code: 5ngy was solved by M.Claverie, G.Cioci, M.Remaud-Simeon, C.Moulis, S.Tranier, M.Vuillemin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 3.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 105.869, 128.810, 234.518, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23.6

Other elements in 5ngy:

The structure of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M (pdb code 5ngy). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 6 binding sites of Praseodymium where determined in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M, PDB code: 5ngy:
Jump to Praseodymium binding site number: 1; 2; 3; 4; 5; 6;

Praseodymium binding site 1 out of 6 in 5ngy

Go back to Praseodymium Binding Sites List in 5ngy
Praseodymium binding site 1 out of 6 in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr1502

b:79.2
occ:0.80
OD1 A:ASN1347 2.3 69.6 1.0
CG A:ASN1347 3.3 72.1 1.0
ND2 A:ASN1347 3.7 69.9 1.0
OE2 A:GLU1344 4.2 61.3 1.0
OE2 A:GLU484 4.7 68.7 1.0
CB A:ASN1347 4.7 76.1 1.0
OE1 A:GLU1344 4.8 63.3 1.0
OE1 A:GLU484 4.9 72.3 1.0
CD A:GLU1344 4.9 62.8 1.0

Praseodymium binding site 2 out of 6 in 5ngy

Go back to Praseodymium Binding Sites List in 5ngy
Praseodymium binding site 2 out of 6 in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr1503

b:69.4
occ:0.50
OE1 A:GLU1349 4.9 77.1 1.0
OE2 A:GLU1349 5.0 73.7 1.0

Praseodymium binding site 3 out of 6 in 5ngy

Go back to Praseodymium Binding Sites List in 5ngy
Praseodymium binding site 3 out of 6 in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 3 of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr1504

b:82.4
occ:0.50
OD2 A:ASP1325 4.7 71.6 1.0

Praseodymium binding site 4 out of 6 in 5ngy

Go back to Praseodymium Binding Sites List in 5ngy
Praseodymium binding site 4 out of 6 in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 4 of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr1502

b:54.0
occ:0.80
OE2 B:GLU1344 4.1 65.1 1.0
OE2 B:GLU484 4.3 79.4 1.0
OE1 B:GLU484 4.6 78.2 1.0
OE1 B:GLU1344 4.8 59.0 1.0
CD B:GLU1344 4.9 62.8 1.0
CD B:GLU484 4.9 76.0 1.0

Praseodymium binding site 5 out of 6 in 5ngy

Go back to Praseodymium Binding Sites List in 5ngy
Praseodymium binding site 5 out of 6 in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 5 of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr1503

b:59.1
occ:0.50
OE2 B:GLU877 4.6 76.7 1.0

Praseodymium binding site 6 out of 6 in 5ngy

Go back to Praseodymium Binding Sites List in 5ngy
Praseodymium binding site 6 out of 6 in the Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 6 of Crystal Structure of Leuconostoc Citreum Nrrl B-1299 Dextransucrase Dsr-M within 5.0Å range:

Reference:

M.Claverie, G.Cioci, M.Vuillemin, N.Monties, P.Roblin, G.Lippens, M.Remaud-Simeon, C.Moulis. Investigations on the Determinants Responsible For Low Molar Mass Dextran Formation By Dsr-M Dextransucrase Acs Catalysis 2017.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.7B02182
Page generated: Thu Oct 29 06:39:33 2020

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