Praseodymium in PDB 5wrc: Crystal Structure of Proteinase K From Engyodontium Album

All present enzymatic activity of Crystal Structure of Proteinase K From Engyodontium Album:
3.4.21.64;

The structure of Crystal Structure of Proteinase K From Engyodontium Album, PDB code: 5wrc was solved by M.Sugahara, T.Nakane, M.Suzuki, T.Masuda, S.Inoue, K.Numata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.70 / 1.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	68.600, 68.600, 108.800, 90.00, 90.00, 90.00
R / Rfree (%)	17.6 / 19.3

The binding sites of Praseodymium atom in the Crystal Structure of Proteinase K From Engyodontium Album (pdb code 5wrc). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Crystal Structure of Proteinase K From Engyodontium Album, PDB code: 5wrc:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in the Crystal Structure of Proteinase K From Engyodontium Album


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of Proteinase K From Engyodontium Album within 5.0Å range: probe atom residue distance (Å) B Occ A:Pr1002 b:11.4 occ:0.74 O A:PRO175 2.3 12.2 1.0 OD2 A:ASP200 2.3 12.6 1.0 O A:VAL177 2.3 13.3 1.0 O A:HOH1229 2.3 21.8 1.0 O A:HOH1240 2.4 17.1 1.0 O A:HOH1168 2.4 16.6 1.0 O A:HOH1170 2.4 15.1 1.0 OD1 A:ASP200 2.5 16.2 1.0 CG A:ASP200 2.8 14.7 1.0 C A:PRO175 3.5 11.2 1.0 C A:VAL177 3.6 11.9 1.0 N A:VAL177 4.1 11.9 1.0 CA A:PRO175 4.3 13.1 1.0 CB A:ASP200 4.3 11.8 1.0 O A:VAL198 4.4 16.4 1.0 C A:SER176 4.5 13.4 1.0 N A:SER176 4.5 12.6 1.0 N A:CYS178 4.5 11.7 1.0 CA A:VAL177 4.5 12.6 1.0 CA A:CYS178 4.6 10.6 1.0 O A:GLU174 4.6 12.5 1.0 CA A:SER176 4.7 12.4 1.0 N A:THR179 4.8 9.9 1.0 O A:HOH1121 4.8 30.4 1.0 O A:HOH1220 4.9 24.2 1.0 SG A:CYS249 4.9 13.3 1.0

Praseodymium binding site 2 out of 2 in the Crystal Structure of Proteinase K From Engyodontium Album


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Crystal Structure of Proteinase K From Engyodontium Album within 5.0Å range: probe atom residue distance (Å) B Occ A:Pr1003 b:21.9 occ:0.69 O A:HOH1161 2.4 32.2 1.0 O A:HOH1299 2.4 32.8 1.0 O A:HOH1254 2.4 32.5 1.0 O A:HOH1201 2.4 33.5 1.0 O A:HOH1107 2.4 35.3 1.0 OD1 A:ASP260 2.5 24.0 1.0 O A:THR16 2.6 20.5 1.0 OD2 A:ASP260 2.6 20.3 1.0 O A:HOH1292 2.7 24.1 1.0 CG A:ASP260 2.9 23.4 1.0 C A:THR16 3.8 18.2 1.0 CB A:ASP260 4.4 19.2 1.0 OG A:SER17 4.5 30.9 1.0 O A:HOH1297 4.6 36.0 1.0 CB A:THR16 4.6 20.7 1.0 OD1 A:ASN257 4.6 22.0 1.0 CA A:THR16 4.7 15.8 1.0 N A:SER17 4.7 17.3 1.0 CA A:SER17 4.8 18.8 1.0 O A:HOH1113 5.0 21.4 1.0

M.Sugahara, T.Nakane, T.Masuda, M.Suzuki, S.Inoue, C.Song, R.Tanaka, T.Nakatsu, E.Mizohata, F.Yumoto, K.Tono, Y.Joti, T.Kameshima, T.Hatsui, M.Yabashi, O.Nureki, K.Numata, E.Nango, S.Iwata. Hydroxyethyl Cellulose Matrix Applied to Serial Crystallography Sci Rep V. 7 703 2017.
ISSN: ESSN 2045-2322
PubMed: 28386083
DOI: 10.1038/S41598-017-00761-0