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Praseodymium in PDB 6euq: Mdfa(Q131R/L339E)

Protein crystallography data

The structure of Mdfa(Q131R/L339E), PDB code: 6euq was solved by H.K.Tam, E.Zomot, E.Bibi, K.M.Pos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.64 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.189, 62.869, 100.480, 90.00, 110.30, 90.00
R / Rfree (%) 23.1 / 24.8

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Mdfa(Q131R/L339E) (pdb code 6euq). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Mdfa(Q131R/L339E), PDB code: 6euq:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 6euq

Go back to Praseodymium Binding Sites List in 6euq
Praseodymium binding site 1 out of 2 in the Mdfa(Q131R/L339E)


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Mdfa(Q131R/L339E) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr503

b:58.6
occ:0.85
OE1 A:GLU207 2.6 63.7 1.0
O A:HOH637 2.8 59.1 1.0
OD2 A:ASP211 2.9 55.1 1.0
OD1 A:ASP211 3.1 56.4 1.0
O A:ACT512 3.1 75.2 1.0
O1 A:PGE507 3.1 64.0 1.0
OXT A:ACT512 3.3 77.7 1.0
CG A:ASP211 3.4 55.4 1.0
C A:ACT512 3.5 76.3 1.0
C1 A:PGE507 3.6 65.3 1.0
CD A:GLU207 3.7 63.6 1.0
O A:HOH619 3.9 49.8 1.0
O A:HOH638 4.0 48.6 1.0
PR A:PR504 4.1 62.2 0.8
CG A:GLU207 4.3 64.0 1.0
O A:HOH610 4.7 50.8 1.0
OE2 A:GLU207 4.7 64.4 1.0
CB A:ASP211 4.8 55.2 1.0
CH3 A:ACT512 4.9 76.3 1.0
C2 A:PGE507 4.9 66.8 1.0

Praseodymium binding site 2 out of 2 in 6euq

Go back to Praseodymium Binding Sites List in 6euq
Praseodymium binding site 2 out of 2 in the Mdfa(Q131R/L339E)


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Mdfa(Q131R/L339E) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr504

b:62.2
occ:0.85
O1 A:PGE507 2.6 64.0 1.0
OE1 A:GLU207 2.7 63.7 1.0
OE2 A:GLU207 2.8 64.4 1.0
O A:HOH641 2.9 44.1 1.0
O A:HOH619 3.1 49.8 1.0
CD A:GLU207 3.1 63.6 1.0
C1 A:PGE507 4.0 65.3 1.0
PR A:PR503 4.1 58.6 0.8
OD1 A:ASP211 4.5 56.4 1.0
CG A:GLU207 4.6 64.0 1.0
C2 A:PGE507 4.7 66.8 1.0
NE A:ARG210 4.8 61.4 1.0
NH2 A:ARG210 4.8 61.2 1.0

Reference:

E.Zomot, E.H.Yardeni, A.V.Vargiu, H.K.Tam, G.Malloci, V.K.Ramaswamy, M.Perach, P.Ruggerone, K.M.Pos, E.Bibi. A New Critical Conformational Determinant of Multidrug Efflux By An Mfs Transporter. J. Mol. Biol. V. 430 1368 2018.
ISSN: ESSN 1089-8638
PubMed: 29530612
DOI: 10.1016/J.JMB.2018.02.026
Page generated: Thu Oct 29 06:39:32 2020

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