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Praseodymium in PDB 6k2x: Crystal Structure of Proteinase K From Engyodontium Album

Enzymatic activity of Crystal Structure of Proteinase K From Engyodontium Album

All present enzymatic activity of Crystal Structure of Proteinase K From Engyodontium Album:
3.4.21.64;

Protein crystallography data

The structure of Crystal Structure of Proteinase K From Engyodontium Album, PDB code: 6k2x was solved by M.Sugahara, K.Motomura, K.Numata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.50 / 1.65
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.170, 68.170, 108.160, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 18.1

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Crystal Structure of Proteinase K From Engyodontium Album (pdb code 6k2x). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Crystal Structure of Proteinase K From Engyodontium Album, PDB code: 6k2x:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 6k2x

Go back to Praseodymium Binding Sites List in 6k2x
Praseodymium binding site 1 out of 2 in the Crystal Structure of Proteinase K From Engyodontium Album


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Crystal Structure of Proteinase K From Engyodontium Album within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr1001

b:17.1
occ:0.81
O A:PRO175 2.4 19.2 1.0
O A:HOH1230 2.4 21.5 1.0
O A:VAL177 2.4 20.0 1.0
OD2 A:ASP200 2.5 18.5 1.0
O A:HOH1134 2.5 21.7 1.0
OD1 A:ASP200 2.6 21.7 1.0
O A:HOH1114 2.6 30.7 1.0
O A:HOH1131 2.6 20.0 1.0
O A:HOH1170 2.7 31.2 1.0
CG A:ASP200 2.8 19.8 1.0
C A:PRO175 3.5 20.2 1.0
C A:VAL177 3.7 19.1 1.0
N A:VAL177 4.2 18.6 1.0
CA A:PRO175 4.2 20.7 1.0
CB A:ASP200 4.3 16.4 1.0
O A:VAL198 4.4 21.7 1.0
O A:HOH1278 4.4 41.9 1.0
C A:SER176 4.4 22.8 1.0
N A:SER176 4.5 17.9 1.0
CA A:CYS178 4.6 18.0 1.0
N A:CYS178 4.6 17.0 1.0
O A:HOH1192 4.6 35.9 1.0
CA A:VAL177 4.6 19.4 1.0
O A:GLU174 4.6 19.5 1.0
CA A:SER176 4.7 18.4 1.0
N A:THR179 4.7 17.8 1.0
OG1 A:THR179 4.9 17.3 1.0
SG A:CYS249 4.9 19.6 1.0

Praseodymium binding site 2 out of 2 in 6k2x

Go back to Praseodymium Binding Sites List in 6k2x
Praseodymium binding site 2 out of 2 in the Crystal Structure of Proteinase K From Engyodontium Album


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Crystal Structure of Proteinase K From Engyodontium Album within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr1002

b:29.3
occ:0.71
O A:HOH1172 2.2 31.5 1.0
O A:HOH1109 2.4 35.6 1.0
OD1 A:ASP260 2.5 29.9 1.0
O A:THR16 2.5 26.0 1.0
O A:HOH1246 2.5 31.2 1.0
OD2 A:ASP260 2.5 26.0 1.0
O A:HOH1214 2.6 41.1 1.0
O A:HOH1227 2.7 41.9 1.0
CG A:ASP260 2.8 29.2 1.0
C A:THR16 3.7 24.1 1.0
O A:HOH1212 4.3 37.5 1.0
CB A:ASP260 4.3 23.0 1.0
CB A:THR16 4.6 28.2 1.0
OD1 A:ASN257 4.6 30.0 1.0
CA A:THR16 4.6 24.9 1.0
N A:SER17 4.6 24.9 1.0
CA A:SER17 4.7 24.6 1.0
O A:HOH1279 4.9 42.7 1.0
NH2 A:ARG12 4.9 21.2 1.0
O A:HOH1105 5.0 25.4 1.0
CG A:ASN257 5.0 24.1 1.0

Reference:

M.Sugahara, K.Motomura, K.Numata. Crystal Structure of Proteinase K From Engyodontium Album To Be Published.
Page generated: Thu Oct 29 06:39:32 2020

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