Atomistry » Praseodymium » PDB 1k0z-6vrz » 6oom
Atomistry »
  Praseodymium »
    PDB 1k0z-6vrz »
      6oom »

Praseodymium in PDB 6oom: Protein A

Protein crystallography data

The structure of Protein A, PDB code: 6oom was solved by M.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.239, 63.031, 102.340, 90.00, 101.28, 90.00
R / Rfree (%) n/a / n/a

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Protein A (pdb code 6oom). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Protein A, PDB code: 6oom:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 6oom

Go back to Praseodymium Binding Sites List in 6oom
Praseodymium binding site 1 out of 2 in the Protein A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Protein A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr503

b:82.8
occ:1.00
OD2 A:ASP211 2.5 64.3 1.0
OE2 A:GLU207 2.6 82.2 1.0
CG A:ASP211 3.3 61.9 1.0
OD1 A:ASP211 3.3 63.5 1.0
CD A:GLU207 3.6 79.2 1.0
OE1 A:GLU207 3.8 81.5 1.0
PR A:PR504 4.3 96.5 1.0
CB A:ASP211 4.6 59.9 1.0
CG A:GLU207 4.9 78.2 1.0
O A:GLU207 5.0 68.1 1.0

Praseodymium binding site 2 out of 2 in 6oom

Go back to Praseodymium Binding Sites List in 6oom
Praseodymium binding site 2 out of 2 in the Protein A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Protein A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr504

b:96.5
occ:1.00
OE2 A:GLU207 3.0 82.2 1.0
CD A:GLU207 3.7 79.2 1.0
CG A:GLU207 3.7 78.2 1.0
OD1 A:ASP211 4.2 63.5 1.0
PR A:PR503 4.3 82.8 1.0
OE1 A:GLU207 4.8 81.5 1.0

Reference:

H.H.Wu, J.Symersky, M.Lu. Structure of An Engineered Multidrug Transporter Mdfa Reveals the Molecular Basis For Substrate Recognition. Commun Biol V. 2 210 2019.
ISSN: ESSN 2399-3642
PubMed: 31240248
DOI: 10.1038/S42003-019-0446-Y
Page generated: Wed Dec 16 02:03:12 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy