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Praseodymium in PDB 6oom: Protein A

Protein crystallography data

The structure of Protein A, PDB code: 6oom was solved by M.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.239, 63.031, 102.340, 90.00, 101.28, 90.00
R / Rfree (%) n/a / n/a

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Protein A (pdb code 6oom). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Protein A, PDB code: 6oom:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 6oom

Go back to Praseodymium Binding Sites List in 6oom
Praseodymium binding site 1 out of 2 in the Protein A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Protein A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr503

b:82.8
occ:1.00
OD2 A:ASP211 2.5 64.3 1.0
OE2 A:GLU207 2.6 82.2 1.0
CG A:ASP211 3.3 61.9 1.0
OD1 A:ASP211 3.3 63.5 1.0
CD A:GLU207 3.6 79.2 1.0
OE1 A:GLU207 3.8 81.5 1.0
PR A:PR504 4.3 96.5 1.0
CB A:ASP211 4.6 59.9 1.0
CG A:GLU207 4.9 78.2 1.0
O A:GLU207 5.0 68.1 1.0

Praseodymium binding site 2 out of 2 in 6oom

Go back to Praseodymium Binding Sites List in 6oom
Praseodymium binding site 2 out of 2 in the Protein A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Protein A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr504

b:96.5
occ:1.00
OE2 A:GLU207 3.0 82.2 1.0
CD A:GLU207 3.7 79.2 1.0
CG A:GLU207 3.7 78.2 1.0
OD1 A:ASP211 4.2 63.5 1.0
PR A:PR503 4.3 82.8 1.0
OE1 A:GLU207 4.8 81.5 1.0

Reference:

H.H.Wu, J.Symersky, M.Lu. Structure of An Engineered Multidrug Transporter Mdfa Reveals the Molecular Basis For Substrate Recognition. Commun Biol V. 2 210 2019.
ISSN: ESSN 2399-3642
PubMed: 31240248
DOI: 10.1038/S42003-019-0446-Y
Page generated: Thu Oct 29 06:39:34 2020

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