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Praseodymium in PDB 6oop: Protein B

Protein crystallography data

The structure of Protein B, PDB code: 6oop was solved by M.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.068, 63.149, 102.074, 90.00, 100.87, 90.00
R / Rfree (%) n/a / n/a

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Protein B (pdb code 6oop). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Protein B, PDB code: 6oop:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 6oop

Go back to Praseodymium Binding Sites List in 6oop
Praseodymium binding site 1 out of 2 in the Protein B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Protein B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr502

b:0.4
occ:1.00
OD2 A:ASP211 2.6 75.1 1.0
OE2 A:GLU207 2.7 92.3 1.0
CG A:ASP211 3.4 74.0 1.0
OD1 A:ASP211 3.5 76.2 1.0
CD A:GLU207 3.7 90.1 1.0
OE1 A:GLU207 4.0 92.2 1.0
PR A:PR503 4.4 0.1 1.0
CB A:ASP211 4.8 70.3 1.0
CG A:GLU207 4.9 87.3 1.0

Praseodymium binding site 2 out of 2 in 6oop

Go back to Praseodymium Binding Sites List in 6oop
Praseodymium binding site 2 out of 2 in the Protein B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Protein B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr503

b:0.1
occ:1.00
OE2 A:GLU207 3.5 92.3 1.0
CG A:GLU207 3.9 87.3 1.0
CD A:GLU207 4.1 90.1 1.0
PR A:PR502 4.4 0.4 1.0
OD1 A:ASP211 4.5 76.2 1.0

Reference:

H.H.Wu, J.Symersky, M.Lu. Structure of An Engineered Multidrug Transporter Mdfa Reveals the Molecular Basis For Substrate Recognition. Commun Biol V. 2 210 2019.
ISSN: ESSN 2399-3642
PubMed: 31240248
DOI: 10.1038/S42003-019-0446-Y
Page generated: Thu Oct 29 06:39:34 2020

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