Praseodymium in PDB 6u3z: Structure of VD20_5A4 Fab

The structure of Structure of VD20_5A4 Fab, PDB code: 6u3z was solved by G.Dionne, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	84.30 / 1.99
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	175.207, 108.733, 55.418, 90.00, 105.78, 90.00
R / Rfree (%)	19.9 / 23.6

The structure of Structure of VD20_5A4 Fab also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Praseodymium atom in the Structure of VD20_5A4 Fab (pdb code 6u3z). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total only one binding site of Praseodymium was determined in the Structure of VD20_5A4 Fab, PDB code: 6u3z:

Praseodymium binding site 1 out of 1 in the Structure of VD20_5A4 Fab


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Structure of VD20_5A4 Fab within 5.0Å range: probe atom residue distance (Å) B Occ B:Pr301 b:0.5 occ:1.00 C B:LEU11 3.7 35.3 1.0 CA B:LEU11 3.8 33.5 1.0 OG B:SER10 3.8 36.0 1.0 OG D:SER10 3.8 44.2 1.0 N B:SER12 3.9 37.2 1.0 N B:LEU11 3.9 33.3 1.0 C B:SER10 4.1 33.0 1.0 O D:SER10 4.1 29.5 1.0 CB B:SER12 4.2 37.0 1.0 O B:SER10 4.2 32.5 1.0 O B:LEU11 4.2 28.9 1.0 CB B:SER10 4.2 38.5 1.0 OE1 B:GLU105 4.3 0.4 1.0 C D:SER10 4.5 30.6 1.0 CA B:SER12 4.6 35.5 1.0 CA D:LEU11 4.6 34.4 1.0 CD B:GLU105 4.6 1.0 1.0 OE2 B:GLU105 4.7 0.7 1.0 CB D:SER10 4.7 39.4 1.0 N D:LEU11 4.8 27.3 1.0 CA B:SER10 4.8 32.2 1.0 N D:SER12 4.9 31.8 1.0 C D:LEU11 4.9 32.8 1.0

G.E.Phad, P.Pushparaj, K.Tran, V.Dubrovskaya, M.Adori, P.Martinez-Murillo, N.Vazquez Bernat, S.Singh, G.Dionne, S.O'dell, K.Bhullar, S.Narang, C.Sorini, E.J.Villablanca, C.Sundling, B.Murrell, J.R.Mascola, L.Shapiro, M.Pancera, M.Martin, M.Corcoran, R.T.Wyatt, G.B.Karlsson Hedestam. Extensive Dissemination and Intraclonal Maturation of Hiv Env Vaccine-Induced B Cell Responses. J.Exp.Med. 2019.
ISSN: ESSN 1540-9538
PubMed: 31704807
DOI: 10.1084/JEM.20191155