Atomistry » Praseodymium » PDB 6e1a-9bif » 6u3z
Atomistry »
  Praseodymium »
    PDB 6e1a-9bif »
      6u3z »

Praseodymium in PDB 6u3z: Structure of VD20_5A4 Fab

Protein crystallography data

The structure of Structure of VD20_5A4 Fab, PDB code: 6u3z was solved by G.Dionne, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 84.30 / 1.99
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 175.207, 108.733, 55.418, 90.00, 105.78, 90.00
R / Rfree (%) 19.9 / 23.6

Other elements in 6u3z:

The structure of Structure of VD20_5A4 Fab also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Structure of VD20_5A4 Fab (pdb code 6u3z). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total only one binding site of Praseodymium was determined in the Structure of VD20_5A4 Fab, PDB code: 6u3z:

Praseodymium binding site 1 out of 1 in 6u3z

Go back to Praseodymium Binding Sites List in 6u3z
Praseodymium binding site 1 out of 1 in the Structure of VD20_5A4 Fab


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Structure of VD20_5A4 Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Pr301

b:0.5
occ:1.00
C B:LEU11 3.7 35.3 1.0
CA B:LEU11 3.8 33.5 1.0
OG B:SER10 3.8 36.0 1.0
OG D:SER10 3.8 44.2 1.0
N B:SER12 3.9 37.2 1.0
N B:LEU11 3.9 33.3 1.0
C B:SER10 4.1 33.0 1.0
O D:SER10 4.1 29.5 1.0
CB B:SER12 4.2 37.0 1.0
O B:SER10 4.2 32.5 1.0
O B:LEU11 4.2 28.9 1.0
CB B:SER10 4.2 38.5 1.0
OE1 B:GLU105 4.3 0.4 1.0
C D:SER10 4.5 30.6 1.0
CA B:SER12 4.6 35.5 1.0
CA D:LEU11 4.6 34.4 1.0
CD B:GLU105 4.6 1.0 1.0
OE2 B:GLU105 4.7 0.7 1.0
CB D:SER10 4.7 39.4 1.0
N D:LEU11 4.8 27.3 1.0
CA B:SER10 4.8 32.2 1.0
N D:SER12 4.9 31.8 1.0
C D:LEU11 4.9 32.8 1.0

Reference:

G.E.Phad, P.Pushparaj, K.Tran, V.Dubrovskaya, M.Adori, P.Martinez-Murillo, N.Vazquez Bernat, S.Singh, G.Dionne, S.O'dell, K.Bhullar, S.Narang, C.Sorini, E.J.Villablanca, C.Sundling, B.Murrell, J.R.Mascola, L.Shapiro, M.Pancera, M.Martin, M.Corcoran, R.T.Wyatt, G.B.Karlsson Hedestam. Extensive Dissemination and Intraclonal Maturation of Hiv Env Vaccine-Induced B Cell Responses. J.Exp.Med. 2019.
ISSN: ESSN 1540-9538
PubMed: 31704807
DOI: 10.1084/JEM.20191155
Page generated: Thu Oct 10 10:31:17 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy