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Praseodymium in PDB 6vrz: Protein A

Protein crystallography data

The structure of Protein A, PDB code: 6vrz was solved by M.Lu, M.M.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.048, 65.215, 111.462, 90.00, 111.32, 90.00
R / Rfree (%) 22 / 23.3

Other elements in 6vrz:

The structure of Protein A also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Protein A (pdb code 6vrz). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Protein A, PDB code: 6vrz:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 6vrz

Go back to Praseodymium Binding Sites List in 6vrz
Praseodymium binding site 1 out of 2 in the Protein A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Protein A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr502

b:0.6
occ:0.50
OD2 A:ASP211 3.4 70.6 1.0
OE1 A:GLU207 4.0 84.2 1.0
CG A:ASP211 4.3 66.0 1.0
OD1 A:ASP211 4.3 68.4 1.0
CD A:GLU207 4.6 81.6 1.0
PR A:PR503 4.8 0.3 0.5
CB A:GLU207 4.8 68.3 1.0

Praseodymium binding site 2 out of 2 in 6vrz

Go back to Praseodymium Binding Sites List in 6vrz
Praseodymium binding site 2 out of 2 in the Protein A


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Protein A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr503

b:0.3
occ:0.50
O A:GLU207 3.3 59.7 1.0
CG A:GLU207 3.6 74.7 1.0
CA A:GLU207 3.7 64.6 1.0
CG A:ARG210 3.7 65.1 1.0
OD1 A:ASP211 3.8 68.4 1.0
CB A:GLU207 3.8 68.3 1.0
CB A:ARG210 3.9 60.4 1.0
C A:GLU207 3.9 62.6 1.0
O A:HOH639 4.0 75.1 1.0
CD A:GLU207 4.2 81.6 1.0
CG A:ASP211 4.3 66.0 1.0
OE2 A:GLU207 4.3 82.8 1.0
OD2 A:ASP211 4.5 70.6 1.0
N A:ASP211 4.7 56.4 1.0
PR A:PR502 4.8 0.6 0.5
OE1 A:GLU207 4.9 84.2 1.0
C A:ARG210 5.0 57.0 1.0

Reference:

H.H.Wu, J.Symersky, M.Lu. Structure and Mechanism of A Redesigned Multidrug Transporter From the Major Facilitator Superfamily. Sci Rep V. 10 3949 2020.
ISSN: ESSN 2045-2322
PubMed: 32127561
DOI: 10.1038/S41598-020-60332-8
Page generated: Wed Dec 16 02:03:17 2020

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