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Praseodymium in PDB 6vs0: Protein B

Protein crystallography data

The structure of Protein B, PDB code: 6vs0 was solved by M.Lu, M.M.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.795, 63.433, 109.300, 90.00, 108.85, 90.00
R / Rfree (%) 24 / 26

Other elements in 6vs0:

The structure of Protein B also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Protein B (pdb code 6vs0). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Protein B, PDB code: 6vs0:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in 6vs0

Go back to Praseodymium Binding Sites List in 6vs0
Praseodymium binding site 1 out of 2 in the Protein B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Protein B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr502

b:56.0
occ:0.50
OD2 A:ASP211 2.8 80.9 1.0
OD1 A:ASP211 3.0 82.9 1.0
CG A:ASP211 3.3 79.3 1.0
O A:HOH623 3.8 72.5 1.0
PR A:PR503 4.2 58.0 0.5
OE1 A:GLU207 4.3 0.9 1.0
CB A:ASP211 4.8 72.3 1.0
O A:GLU207 4.9 83.9 1.0

Praseodymium binding site 2 out of 2 in 6vs0

Go back to Praseodymium Binding Sites List in 6vs0
Praseodymium binding site 2 out of 2 in the Protein B


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Protein B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr503

b:58.0
occ:0.50
OE1 A:GLU207 2.6 0.9 1.0
CD A:GLU207 3.5 0.3 1.0
PR A:PR502 4.2 56.0 0.5
OE2 A:GLU207 4.3 0.5 1.0
CG A:GLU207 4.3 0.7 1.0
CB A:GLU207 4.7 0.3 1.0
OD1 A:ASP211 4.8 82.9 1.0
O A:HOH641 4.9 91.5 1.0

Reference:

H.H.Wu, J.Symersky, M.Lu. Structure and Mechanism of A Redesigned Multidrug Transporter From the Major Facilitator Superfamily. Sci Rep V. 10 3949 2020.
ISSN: ESSN 2045-2322
PubMed: 32127561
DOI: 10.1038/S41598-020-60332-8
Page generated: Thu Oct 29 06:39:41 2020

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