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Praseodymium in PDB 7bxf: Mvca-LPG2149 Complex

Protein crystallography data

The structure of Mvca-LPG2149 Complex, PDB code: 7bxf was solved by P.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.82 / 2.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 136.998, 81.229, 54.253, 90.00, 95.09, 90.00
R / Rfree (%) 21.4 / 25.8

Praseodymium Binding Sites:

The binding sites of Praseodymium atom in the Mvca-LPG2149 Complex (pdb code 7bxf). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 4 binding sites of Praseodymium where determined in the Mvca-LPG2149 Complex, PDB code: 7bxf:
Jump to Praseodymium binding site number: 1; 2; 3; 4;

Praseodymium binding site 1 out of 4 in 7bxf

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Praseodymium binding site 1 out of 4 in the Mvca-LPG2149 Complex


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Mvca-LPG2149 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr501

b:41.7
occ:1.00
OE1 A:GLU375 2.2 64.8 1.0
OD1 A:ASP372 2.7 37.1 1.0
CD A:GLU375 2.9 66.2 1.0
OE2 A:GLU375 3.0 72.2 1.0
O A:HOH632 3.1 14.4 1.0
O A:HOH624 3.1 27.8 1.0
CG A:ASP372 3.8 39.3 1.0
CG A:GLU375 4.2 48.4 1.0
PR A:PR502 4.3 33.9 1.0
OD2 A:ASP372 4.4 48.4 1.0
CB A:ASP372 5.0 24.9 1.0

Praseodymium binding site 2 out of 4 in 7bxf

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Praseodymium binding site 2 out of 4 in the Mvca-LPG2149 Complex


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Mvca-LPG2149 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Pr502

b:33.9
occ:1.00
OE1 A:GLU368 2.5 71.6 1.0
OD2 A:ASP372 2.6 48.4 1.0
CD A:GLU368 3.3 67.4 1.0
O A:HOH632 3.3 14.4 1.0
CG A:ASP372 3.3 39.3 1.0
OD1 A:ASP372 3.4 37.1 1.0
OE2 A:GLU368 3.8 66.1 1.0
CG A:GLU368 4.3 44.2 1.0
PR A:PR501 4.3 41.7 1.0
N A:GLU368 4.6 31.2 1.0
CB A:GLU368 4.7 35.6 1.0
CB A:ASP372 4.7 24.9 1.0

Praseodymium binding site 3 out of 4 in 7bxf

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Praseodymium binding site 3 out of 4 in the Mvca-LPG2149 Complex


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 3 of Mvca-LPG2149 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pr201

b:35.4
occ:1.00
OE2 C:GLU54 2.3 80.0 1.0
OE1 C:GLU51 3.3 98.5 1.0
CD C:GLU54 3.5 77.2 1.0
OE2 C:GLU51 3.9 0.4 1.0
CD C:GLU51 4.0 94.7 1.0
OE1 C:GLU54 4.1 81.8 1.0
PR C:PR202 4.3 65.6 1.0
NZ C:LYS47 4.3 51.6 1.0
CG C:GLU54 4.6 62.5 1.0

Praseodymium binding site 4 out of 4 in 7bxf

Go back to Praseodymium Binding Sites List in 7bxf
Praseodymium binding site 4 out of 4 in the Mvca-LPG2149 Complex


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 4 of Mvca-LPG2149 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Pr202

b:65.6
occ:1.00
OE1 C:GLU54 2.4 81.8 1.0
CD C:GLU54 3.3 77.2 1.0
OE2 C:GLU54 3.6 80.0 1.0
PR C:PR201 4.3 35.4 1.0
CG C:GLU54 4.5 62.5 1.0

Reference:

P.Gao, P.Gao. N/A N/A.
Page generated: Wed Dec 16 02:03:22 2020

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