Praseodymium in PDB 6euq: Mdfa(Q131R/L339E)

The structure of Mdfa(Q131R/L339E), PDB code: 6euq was solved by H.K.Tam, E.Zomot, E.Bibi, K.M.Pos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.64 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	95.189, 62.869, 100.480, 90.00, 110.30, 90.00
R / Rfree (%)	23.1 / 24.8

The binding sites of Praseodymium atom in the Mdfa(Q131R/L339E) (pdb code 6euq). This binding sites where shown within 5.0 Angstroms radius around Praseodymium atom.
In total 2 binding sites of Praseodymium where determined in the Mdfa(Q131R/L339E), PDB code: 6euq:
Jump to Praseodymium binding site number: 1; 2;

Praseodymium binding site 1 out of 2 in the Mdfa(Q131R/L339E)


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 1 of Mdfa(Q131R/L339E) within 5.0Å range: probe atom residue distance (Å) B Occ A:Pr503 b:58.6 occ:0.85 OE1 A:GLU207 2.6 63.7 1.0 O A:HOH637 2.8 59.1 1.0 OD2 A:ASP211 2.9 55.1 1.0 OD1 A:ASP211 3.1 56.4 1.0 O A:ACT512 3.1 75.2 1.0 O1 A:PGE507 3.1 64.0 1.0 OXT A:ACT512 3.3 77.7 1.0 CG A:ASP211 3.4 55.4 1.0 C A:ACT512 3.5 76.3 1.0 C1 A:PGE507 3.6 65.3 1.0 CD A:GLU207 3.7 63.6 1.0 O A:HOH619 3.9 49.8 1.0 O A:HOH638 4.0 48.6 1.0 PR A:PR504 4.1 62.2 0.8 CG A:GLU207 4.3 64.0 1.0 O A:HOH610 4.7 50.8 1.0 OE2 A:GLU207 4.7 64.4 1.0 CB A:ASP211 4.8 55.2 1.0 CH3 A:ACT512 4.9 76.3 1.0 C2 A:PGE507 4.9 66.8 1.0

Praseodymium binding site 2 out of 2 in the Mdfa(Q131R/L339E)


Mono view


Stereo pair view

A full contact list of Praseodymium with other atoms in the Pr binding site number 2 of Mdfa(Q131R/L339E) within 5.0Å range: probe atom residue distance (Å) B Occ A:Pr504 b:62.2 occ:0.85 O1 A:PGE507 2.6 64.0 1.0 OE1 A:GLU207 2.7 63.7 1.0 OE2 A:GLU207 2.8 64.4 1.0 O A:HOH641 2.9 44.1 1.0 O A:HOH619 3.1 49.8 1.0 CD A:GLU207 3.1 63.6 1.0 C1 A:PGE507 4.0 65.3 1.0 PR A:PR503 4.1 58.6 0.8 OD1 A:ASP211 4.5 56.4 1.0 CG A:GLU207 4.6 64.0 1.0 C2 A:PGE507 4.7 66.8 1.0 NE A:ARG210 4.8 61.4 1.0 NH2 A:ARG210 4.8 61.2 1.0

E.Zomot, E.H.Yardeni, A.V.Vargiu, H.K.Tam, G.Malloci, V.K.Ramaswamy, M.Perach, P.Ruggerone, K.M.Pos, E.Bibi. A New Critical Conformational Determinant of Multidrug Efflux By An Mfs Transporter. J. Mol. Biol. V. 430 1368 2018.
ISSN: ESSN 1089-8638
PubMed: 29530612
DOI: 10.1016/J.JMB.2018.02.026